H
Hiroaki Kawashima
Researcher at National Institute of Advanced Industrial Science and Technology
Publications - 4
Citations - 602
Hiroaki Kawashima is an academic researcher from National Institute of Advanced Industrial Science and Technology. The author has contributed to research in topics: Genome & Genome project. The author has an hindex of 3, co-authored 4 publications receiving 586 citations.
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Journal ArticleDOI
The Rice Annotation Project Database (RAP-DB): 2008 update
Tsuyoshi Tanaka,Baltazar A. Antonio,Shoshi Kikuchi,Takashi Matsumoto,Yoshiaki Nagamura,Hisataka Numa,Hiroaki Sakai,Jianzhong Wu,Takeshi Itoh,Takeshi Itoh,Takuji Sasaki,Ryo Aono,Yasuyuki Fujii,Takuya Habara,Erimi Harada,Masako Kanno,Yoshihiro Kawahara,Hiroaki Kawashima,Hiromi Kubooka,Akihiro Matsuya,Hajime Nakaoka,Naomi Saichi,Ryoko Sanbonmatsu,Yoshiharu Sato,Yuji Shinso,Mami Suzuki,Jun-ichi Takeda,Motohiko Tanino,Fusano Todokoro,Kaori Yamaguchi,Naoyuki Yamamoto,Chisato Yamasaki,Tadashi Imanishi,Toshihisa Okido,Masahito Tada,Kazuho Ikeo,Yoshio Tateno,Takashi Gojobori,Yao-Cheng Lin,Fu Jin Wei,Yue-Ie C. Hsing,Qiang Zhao,Bin Han,Melissa Kramer,Richard W. McCombie,David Lonsdale,Claire O'Donovan,Eleanor J. Whitfield,Rolf Apweiler,Kanako O. Koyanagi,Jitendra P. Khurana,Saurabh Raghuvanshi,Nagendra K. Singh,Akhilesh K. Tyagi,Georg Haberer,Masaki Fujisawa,Satomi Hosokawa,Yukiyo Ito,Hiroshi Ikawa,Michie Shibata,Mayu Yamamoto,Richard Bruskiewich,Douglas R. Hoen,Thomas E. Bureau,Nobukazu Namiki,Hajime Ohyanagi,Yasumichi Sakai,Satoshi Nobushima,Katsumi Sakata,Roberto A. Barrero,Yutaka Sato,Alexandre Souvorov,Brian Smith-White,Tatiana Tatusova,Suyoung An,Gynheung An,Satoshi Oota,Galina Fuks,Joachim Messing,Karen R. Christie,Damien Lieberherr,Hyeran Kim,Andrea Zuccolo,Rod A. Wing,Kan Nobuta,Pamela J. Green,Cheng Lu,Blake C. Meyers,Cristian Chaparro,Benoît Piégu,Olivier Panaud,Manuel Echeverria +91 more
TL;DR: The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc.
Journal ArticleDOI
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
Takeshi Itoh,Takeshi Itoh,Tsuyoshi Tanaka,Roberto A. Barrero,Chisato Yamasaki,Yasuyuki Fujii,Phillip Hilton,Baltazar A. Antonio,Hideo Aono,Rolf Apweiler,Richard Bruskiewich,Thomas E. Bureau,Frances A. Burr,Antonio Costa de Oliveira,Galina Fuks,Takuya Habara,Georg Haberer,Bin Han,Erimi Harada,Aiko T. Hiraki,Hirohiko Hirochika,Douglas R. Hoen,Hiroki Hokari,Satomi Hosokawa,Yue-Ie C. Hsing,Hiroshi Ikawa,Kazuho Ikeo,Tadashi Imanishi,Tadashi Imanishi,Yukiyo Ito,Pankaj Jaiswal,Masako Kanno,Yoshihiro Kawahara,Yoshihiro Kawahara,Toshiyuki Kawamura,Hiroaki Kawashima,Jitendra P. Khurana,Shoshi Kikuchi,Setsuko Komatsu,Kanako O. Koyanagi,Hiromi Kubooka,Damien Lieberherr,Yao-Cheng Lin,David M. Lonsdale,Takashi Matsumoto,Akihiro Matsuya,W. Richard McCombie,Joachim Messing,Akio Miyao,Nicola Mulder,Yoshiaki Nagamura,Jongmin Nam,Jongmin Nam,Nobukazu Namiki,Hisataka Numa,Shin Nurimoto,Claire O'Donovan,Hajime Ohyanagi,Toshihisa Okido,Satoshi Oota,Naoki Osato,Lance E. Palmer,Lance E. Palmer,Francis Quetier,Saurabh Raghuvanshi,Naomi Saichi,Hiroaki Sakai,Hiroaki Sakai,Yasumichi Sakai,Katsumi Sakata,Tetsuya Sakurai,Fumihiko Sato,Yoshiharu Sato,Heiko Schoof,Heiko Schoof,Motoaki Seki,Michie Shibata,Yuji Shimizu,Kazuo Shinozaki,Yuji Shinso,Nagendra K. Singh,Brian Smith-White,Jun-ichi Takeda,Motohiko Tanino,Tatiana Tatusova,Supat Thongjuea,Fusano Todokoro,Mika Tsugane,Akhilesh K. Tyagi,Apichart Vanavichit,Aihui Wang,Rod A. Wing,Kaori Yamaguchi,Mayu Yamamoto,Naoyuki Yamamoto,Yeisoo Yu,Hao Zhang,Qiang Zhao,Kenichi Higo,Benjamin Burr,Takashi Gojobori,Takuji Sasaki +101 more
TL;DR: The results suggest that natural selection may have played a role for duplicated genes in both species, so that duplication was suppressed or favored in a manner that depended on the function of a gene.
Journal ArticleDOI
TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.
Chisato Yamasaki,Hiroaki Kawashima,Fusano Todokoro,Yasuhiro Imamizu,Makoto Ogawa,Motohiko Tanino,Takeshi Itoh,Takashi Gojobori,Tadashi Imanishi +8 more
TL;DR: Results show that the TACT system is useful for functional annotation and that the prediction of ORFs and protein functions is highly accurate and close to the results of human curation.
Journal ArticleDOI
Improvement in the Accuracy of Gene Prediction in Human cDNA Sequences
Fusano Todokoro,Takeshi Itoh,Chisato Yamasaki,Hiroaki Kawashima,Tadashi Imanishi,Takashi Gojobori,Takashi Gojobori +6 more
TL;DR: Ten matrices 10.8 30-38%, 38-42%, 42-46%, 46-50%, 50-54%, 54-58%, 58-62%, 62-62, 66-70%