J
James D. White
Researcher at University of Oklahoma
Publications - 6
Citations - 1460
James D. White is an academic researcher from University of Oklahoma. The author has contributed to research in topics: DNA sequencer & Shotgun sequencing. The author has an hindex of 5, co-authored 6 publications receiving 1345 citations.
Papers
More filters
Journal ArticleDOI
The Medicago genome provides insight into the evolution of rhizobial symbioses
Nevin D. Young,Frédéric Debellé,Frédéric Debellé,Giles E. D. Oldroyd,René Geurts,Steven B. Cannon,Steven B. Cannon,Michael K. Udvardi,Vagner A. Benedito,Klaus F. X. Mayer,Jérôme Gouzy,Jérôme Gouzy,Heiko Schoof,Yves Van de Peer,Sebastian Proost,Douglas R. Cook,Blake C. Meyers,Manuel Spannagl,Foo Cheung,Stéphane De Mita,Vivek Krishnakumar,Heidrun Gundlach,Shiguo Zhou,Joann Mudge,Arvind K. Bharti,Jeremy D. Murray,Marina Naoumkina,Benjamin D. Rosen,Kevin A. T. Silverstein,Haibao Tang,Stephane Rombauts,Patrick X. Zhao,Peng Zhou,Valérie Barbe,Philippe Bardou,Philippe Bardou,Michael Bechner,Arnaud Bellec,Anne Berger,Hélène Bergès,Shelby L. Bidwell,Ton Bisseling,Ton Bisseling,Nathalie Choisne,Arnaud Couloux,Roxanne Denny,Shweta Deshpande,Xinbin Dai,Jeff J. Doyle,Anne Marie Dudez,Anne Marie Dudez,Andrew Farmer,Stéphanie Fouteau,Carolien Franken,Chrystel Gibelin,Chrystel Gibelin,John Gish,Steven A. Goldstein,Alvaro J. González,Pamela J. Green,Asis Hallab,Marijke Hartog,Axin Hua,Sean Humphray,Dong-Hoon Jeong,Yi Jing,Anika Jöcker,Steve Kenton,Dong-Jin Kim,Dong-Jin Kim,Kathrin Klee,Hongshing Lai,Chunting Lang,Shaoping Lin,Simone L. Macmil,Ghislaine Magdelenat,Lucy Matthews,Jamison McCorrison,Erin L. Monaghan,Jeong Hwan Mun,Jeong Hwan Mun,Fares Z. Najar,Christine Nicholson,Céline Noirot,Majesta O'Bleness,Charles Paule,Julie Poulain,Florent Prion,Florent Prion,Baifang Qin,Chunmei Qu,Ernest F. Retzel,Claire Riddle,Erika Sallet,Erika Sallet,Sylvie Samain,Nicolas Samson,Nicolas Samson,Iryna Sanders,Olivier Saurat,Olivier Saurat,Claude Scarpelli,Thomas Schiex,Béatrice Segurens,Andrew J. Severin,D. Janine Sherrier,Ruihua Shi,Sarah Sims,Susan R. Singer,Senjuti Sinharoy,Lieven Sterck,Agnès Viollet,Bing Bing Wang,Keqin Wang,Mingyi Wang,Xiaohong Wang,Jens Warfsmann,Jean Weissenbach,Doug White,James D. White,Graham B. Wiley,Patrick Wincker,Yanbo Xing,Limei Yang,Ziyun Yao,Fu Ying,Jixian Zhai,Liping Zhou,Antoine Zuber,Antoine Zuber,Jean Dénarié,Jean Dénarié,Richard A. Dixon,Gregory D. May,David C. Schwartz,Jane Rogers,Francis Quetier,Christopher D. Town,Bruce A. Roe +138 more
TL;DR: The draft sequence of the M. truncatula genome sequence is described, a close relative of alfalfa (Medicago sativa), a widely cultivated crop with limited genomics tools and complex autotetraploid genetics, which provides significant opportunities to expand al falfa’s genomic toolbox.
Journal ArticleDOI
Ecogenomics: using massively parallel pyrosequencing to understand virus ecology.
Marilyn J. Roossinck,Prasenjit Saha,Graham B. Wiley,Jiaxi Quan,James D. White,Hongshing Lai,Felipe Chavarría,Guoan Shen,Bruce A. Roe +8 more
TL;DR: Using a strategy to isolate double‐stranded RNA from individual plants and convert this to cDNA with a unique four nucleotide Tag at each end, this technology will be extremely useful in understanding the full scope of plant virus biodiversity.
Journal ArticleDOI
Strategies for rapid and accurate DNA sequencing
Stephanie L. Chissoe,Yun-Fang Wang,Sandra W. Clifton,Nien-Tung Ma,Hei-Jen Sun,Judy S. Lobsinger,Steve Kenton,James D. White,Bruce A. Roe +8 more
TL;DR: A sequencing strategy that combines these isolation and sequencing methods with initial shotgun cloning followed by a short oligonucleotide primer walking approach for both contig joining and proofreading is described, which significantly increase the rate and ease of DNA sequence data acquisition, as well as improve the extent and accuracy of the sequence data.
Journal ArticleDOI
Methods for generating shotgun and mixed shotgun/paired-end libraries for the 454 DNA sequencer.
Graham B. Wiley,Simone L. Macmil,Chunmei Qu,Ping Wang,Yanbo Xing,Doug White,Jianfeng Li,James D. White,Alexander Domingo,Bruce A. Roe +9 more
TL;DR: The methods provided by the manufacturer for genome sequencing using the 454/Roche GS‐20 and GS‐FLX instruments are robust, but in an effort to streamline them for automation, several novel changes are incorporated and several extraneous steps are deleted.
Journal ArticleDOI
FELINES: a utility for extracting and examining EST‐defined introns and exons
Scott D. Drabenstot,Doris M. Kupfer,James D. White,David W. Dyer,Bruce A. Roe,Kent L. Buchanan,Juneann W. Murphy +6 more
TL;DR: FELINES was shown to be useful for characterizing branchsites, polypyrimidine tracts and 5' and 3' splice sites in the intron databases and exonic splicing enhancers in S.pombe exons.