J
Jeremiah J. Faith
Researcher at Icahn School of Medicine at Mount Sinai
Publications - 112
Citations - 21045
Jeremiah J. Faith is an academic researcher from Icahn School of Medicine at Mount Sinai. The author has contributed to research in topics: Medicine & Gut flora. The author has an hindex of 35, co-authored 85 publications receiving 16852 citations. Previous affiliations of Jeremiah J. Faith include Cold Spring Harbor Laboratory & Boston University.
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Journal ArticleDOI
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.
Nicholas A. Bokulich,Sathish Subramanian,Jeremiah J. Faith,Dirk Gevers,Jeffrey I. Gordon,Rob Knight,Rob Knight,David A. Mills,J. Gregory Caporaso,J. Gregory Caporaso +9 more
TL;DR: It is demonstrated that high-quality read length and abundance are the primary factors differentiating correct from erroneous reads produced by Illumina GAIIx, HiSeq and MiSeq instruments.
Journal ArticleDOI
Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice
Vanessa K. Ridaura,Jeremiah J. Faith,Federico E. Rey,Jiye Cheng,Alexis E. Duncan,Andrew L. Kau,Nicholas W. Griffin,Vincent Lombard,Bernard Henrissat,Bernard Henrissat,James R. Bain,Michael J. Muehlbauer,Olga Ilkayeva,Clay F. Semenkovich,Katsuhiko Funai,David K. Hayashi,Barbara J. Lyle,Margaret C. Martini,Luke K. Ursell,Jose C. Clemente,Will Van Treuren,William A. Walters,Rob Knight,Rob Knight,Christopher B. Newgard,Andrew C. Heath,Jeffrey I. Gordon +26 more
TL;DR: The results reveal that transmissible and modifiable interactions between diet and microbiota influence host biology and that adiposity is transmissible from human to mouse and that it was associated with changes in serum levels of branched-chain amino acids.
Journal ArticleDOI
The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
Peter J. Turnbaugh,Vanessa K. Ridaura,Jeremiah J. Faith,Federico E. Rey,Rob Knight,Jeffrey I. Gordon +5 more
TL;DR: A translational medicine pipeline is described where human gut microbial communities and diets are re-created in gnotobiotic mice and the impact on microbe and host is defined using metagenomics, creating a well-defined, representative animal model of the human gut ecosystem.
Journal ArticleDOI
The Long-Term Stability of the Human Gut Microbiota
Jeremiah J. Faith,Janaki L. Guruge,Mark R. Charbonneau,Sathish Subramanian,Henning Seedorf,Andrew L. Goodman,Jose C. Clemente,Rob Knight,Rob Knight,Andrew C. Heath,Rudolph L. Leibel,Michael Rosenbaum,Jeffrey I. Gordon +12 more
TL;DR: Low-error sequencing data suggest that initial microbial colonizers of infant guts could persist over the life span of an individual, and members of Bacteroidetes and Actinobacteria are significantly more stable components than the population average.
Journal ArticleDOI
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles.
Jeremiah J. Faith,Boris Hayete,Joshua T. Thaden,Ilaria Mogno,Ilaria Mogno,Jamey Wierzbowski,Guillaume Cottarel,Simon Kasif,James J. Collins,Timothy S. Gardner +9 more
TL;DR: The compendium of expression data compiled in this study, coupled with RegulonDB, provides a valuable model system for further improvement of network inference algorithms using experimental data.