J
Jonathan H. Badger
Researcher at J. Craig Venter Institute
Publications - 73
Citations - 32585
Jonathan H. Badger is an academic researcher from J. Craig Venter Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 45, co-authored 71 publications receiving 28673 citations. Previous affiliations of Jonathan H. Badger include University of Waterloo & University of Illinois at Urbana–Champaign.
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Journal ArticleDOI
Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae).
Srijak Bhatnagar,Jonathan H. Badger,Ramana Madupu,Hoda Khouri,Elizabeth M. O’Connor,Frank T. Robb,Naomi L. Ward,Jonathan A. Eisen +7 more
TL;DR: The complete 2,003,803-bp genome of a sulfate-reducing thermophilic bacterium, Thermodesulfovibrio yellowstonii strain DSM 11347T, is presented.
Book ChapterDOI
The Ectocarpus genome and brown algal genomics: the Ectocarpus Genome Consortium
J. Mark Cock,J. Mark Cock,Lieven Sterck,Sophia Ahmed,Sophia Ahmed,Andrew E. Allen,Grigoris D. Amoutzias,Grigoris D. Amoutzias,Véronique Anthouard,François Artiguenave,Alok Arun,Alok Arun,Jean-Marc Aury,Jonathan H. Badger,Bank Beszteri,Bank Beszteri,Kenny Billiau,Eric Bonnet,Eric Bonnet,John H. Bothwell,John H. Bothwell,John H. Bothwell,Chris Bowler,Catherine Boyen,Catherine Boyen,Colin Brownlee,Carl J. Carrano,Bénédicte Charrier,Bénédicte Charrier,Ga Youn Cho,Ga Youn Cho,Susana M. Coelho,Susana M. Coelho,Jonas Collén,Jonas Collén,Gildas Le Corguillé,Erwan Corre,Laurence Dartevelle,Laurence Dartevelle,Corinne Da Silva,Ludovic Delage,Ludovic Delage,Nicolas Delaroque,Simon M. Dittami,Simon M. Dittami,Sylvie Doulbeau,Marek Eliáš,Garry Farnham,Claire M. M. Gachon,Olivier Godfroy,Olivier Godfroy,Bernhard Gschloessl,Bernhard Gschloessl,Svenja Heesch,Svenja Heesch,Kamel Jabbari,Claire Jubin,Hiroshi Kawai,Kei Kimura,Bernard Kloareg,Bernard Kloareg,Frithjof C. Küpper,Frithjof C. Küpper,Daniel Lang,Aude Le Bail,Aude Le Bail,Remy Luthringer,Remy Luthringer,Catherine Leblanc,Catherine Leblanc,Patrice Lerouge,Martin Lohr,Pascal J. Lopez,Nicolas Macaisne,Nicolas Macaisne,Cindy Martens,Florian Maumus,Gurvan Michel,Gurvan Michel,Diego Miranda-Saavedra,Julia Morales,Julia Morales,Hervé Moreau,Taizo Motomura,Chikako Nagasato,Carolyn A. Napoli,David R. Nelson,Pi Nyvall-Collén,Pi Nyvall-Collén,Akira F. Peters,Akira F. Peters,Cyril Pommier,Philippe Potin,Philippe Potin,Julie Poulain,Hadi Quesneville,Betsy A. Read,Stefan A. Rensing,Andrés Ritter,Andrés Ritter,Andrés Ritter,Sylvie Rousvoal,Sylvie Rousvoal,Manoj P. Samanta,Gaelle Samson,Declan C. Schroeder,Delphine Scornet,Delphine Scornet,Béatrice Segurens,Martina Strittmatter,Thierry Tonon,Thierry Tonon,James W. Tregear,Klaus Valentin,Peter von Dassow,Takahiro Yamagishi,Pierre Rouzé,Yves Van de Peer,Patrick Wincker +118 more
TL;DR: Some of the major discoveries that emerged from the analysis of the Ectocarpus genome sequence are reviewed, with a particular focus on the unusual genome structure, inferences aboutbrown algal evolution and novel aspects of brown algal metabolism.
The Phaeodactylum genome reveals the dynamic nature and multi-lineage evolutionary history of diatom genomes
Susan Lucas,Igor V. Grigoriev,Chris Bowler,Andrew E. Allen,Jonathan H. Badger,Jane Grimwood,Kamel Jabbari,Alan Kuo,Uma Maheswari,Cindy Martens,Florian Maumus,Robert Otillar,Edda Rayko,Asaf Salamov,Klaas Vandepoele,Bank Beszteri,Ansgar Gruber,Marc Heijde,Michael Katinka,Thomas Mock,Klaus Valentin,Frédéric Verret,John A. Berges,Colin Brownlee,Jean-Paul Cadoret,A Chivoitti,Chang Jae Choi,Sacha Coesel,A De Martino,Chris Detter,Colleen A. Durkin,Angela Falciatore,J Fournet,Miyoshi Haruta,Marie J. J. Huysman,Bethany D. Jenkins,K Jiroutova,Richard A. Jorgensen,Yolaine Joubert,Aaron Kaplan,N Kroeger,Peter G. Kroth,Erika Lindquist,Markus Lommer,Jezequel,Pascal J. Lopez,Manuela Mangogna,Karen M. McGinnis,Linda K. Medlin,A Monstant,Marie-Pierre Oudot-Le Secq,Carolyn A. Napoli,Miroslav Oborník,Jean-Louis Petit,Betina M. Porcel,Nicole Poulsen,M Robinson,Leszek Rychlewski,Tatiana A. Rynearson,Jeremy Schmutz,Micaela S. Parker,Harris Shapiro,Magali Siaut,Michele S. Stanley,Michael R. Sussman,Alison Taylor,Assaf Vardi,P von Dassow,Wim Vyverman,Anusuya Willis,L Wywicz,Daniel S. Rokhsar,Jean Weissenbach,Armbrust,Beverley R. Green,Y de Peer +75 more
TL;DR: The complete genome sequence of the pennate diatom Phaeodactylum tricornutum is reported and compared with that of T. pseudonana to clarify evolutionary origins, functional significance and ubiquity of these features throughout diatoms.
Journal ArticleDOI
Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters
Huan Chen,Huan Chen,Lauren M. Brinkac,Pamela Mishra,Nan Li,Despoina S. Lymperopoulou,Tamar L. Dickerson,Nadine Gordon-Bradley,Henry N. Williams,Jonathan H. Badger +9 more
TL;DR: The genomes from non-type strains isolated from aquatic environments are reported and the genomic features of the four strains are described and compared, together with the classification and annotation.
Journal ArticleDOI
Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12
David A. Coil,Jonathan H. Badger,Heather C. Forberger,Florenta Riggs,Ramana Madupu,Nadia Fedorova,Naomi L. Ward,Frank T. Robb,Jonathan A. Eisen +8 more
TL;DR: The complete genome of the extreme thermophile, Ddictyoglomus thermophilum H-6-12 (phylum Dictyoglomi), which consists of 1,959,987 bp is presented.