K
Kaisa Nieminen
Researcher at University of Lausanne
Publications - 33
Citations - 6873
Kaisa Nieminen is an academic researcher from University of Lausanne. The author has contributed to research in topics: Cambium & Vascular cambium. The author has an hindex of 22, co-authored 33 publications receiving 5945 citations. Previous affiliations of Kaisa Nieminen include University of Helsinki & Finnish Forest Research Institute.
Papers
More filters
Journal ArticleDOI
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
Gerald A. Tuskan,Gerald A. Tuskan,Stephen P. DiFazio,Stephen P. DiFazio,Stefan Jansson,Joerg Bohlmann,Igor V. Grigoriev,Uffe Hellsten,Nicholas H. Putnam,Steven G. Ralph,Stephane Rombauts,Asaf Salamov,Jacquie Schein,Lieven Sterck,Andrea Aerts,Rishikeshi Bhalerao,Rishikesh P. Bhalerao,Damien Blaudez,Wout Boerjan,Annick Brun,Amy M. Brunner,Victor Busov,Malcolm M. Campbell,John E. Carlson,Michel Chalot,Jarrod Chapman,G.-L. Chen,Dawn Cooper,Pedro M. Coutinho,Jérémy Couturier,Sarah F. Covert,Quentin C. B. Cronk,R. Cunningham,John M. Davis,Sven Degroeve,Annabelle Déjardin,Claude W. dePamphilis,John C. Detter,Bill Dirks,Inna Dubchak,Inna Dubchak,Sébastien Duplessis,Jürgen Ehlting,Brian E. Ellis,Karla C Gendler,David Goodstein,Michael Gribskov,Jane Grimwood,Andrew Groover,Lee E. Gunter,Björn Hamberger,Berthold Heinze,Yrjö Helariutta,Yrjö Helariutta,Yrjö Helariutta,Bernard Henrissat,D. Holligan,Robert A. Holt,Wenyu Huang,N. Islam-Faridi,Steven J.M. Jones,M. Jones-Rhoades,Richard A. Jorgensen,Chandrashekhar P. Joshi,Jaakko Kangasjärvi,Jan Karlsson,Colin T. Kelleher,Robert Kirkpatrick,Matias Kirst,Annegret Kohler,Udaya C. Kalluri,Frank W. Larimer,Jim Leebens-Mack,Jean-Charles Leplé,Philip F. LoCascio,Y. Lou,Susan Lucas,Francis Martin,Barbara Montanini,Carolyn A. Napoli,David R. Nelson,C D Nelson,Kaisa Nieminen,Ove Nilsson,V. Pereda,Gary F. Peter,Ryan N. Philippe,Gilles Pilate,Alexander Poliakov,J. Razumovskaya,Paul G. Richardson,Cécile Rinaldi,Kermit Ritland,Pierre Rouzé,D. Ryaboy,Jeremy Schmutz,J. Schrader,Bo Segerman,H. Shin,Asim Siddiqui,Fredrik Sterky,Astrid Terry,Chung-Jui Tsai,Edward C. Uberbacher,Per Unneberg,Jorma Vahala,Kerr Wall,Susan R. Wessler,Guojun Yang,T. Yin,Carl J. Douglas,Marco A. Marra,Göran Sandberg,Y. Van de Peer,Daniel S. Rokhsar,Daniel S. Rokhsar +115 more
TL;DR: The draft genome of the black cottonwood tree, Populus trichocarpa, has been reported in this paper, with more than 45,000 putative protein-coding genes identified.
Journal ArticleDOI
Cytokinin signaling and its inhibitor AHP6 regulate cell fate during vascular development.
Ari Pekka Mähönen,Anthony Bishopp,Masayuki Higuchi,Kaisa Nieminen,Kaori Kinoshita,Kirsi Törmäkangas,Yoshihisa Ikeda,Atsuhiro Oka,Tatsuo Kakimoto,Yrjö Helariutta +9 more
TL;DR: By controlling the identity of cell lineages, the reciprocal interaction of cytokinin signaling and its spatially specific modulator regulates proliferation and differentiation ofcell lineages during vascular development, demonstrating a previously unrecognized regulatory circuit underlying meristem organization.
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) - eScholarship
Gerald A. Tuskan,Stephen P. DiFazio,Stefan Jansson,Joerg Bohlmann,Igor V. Grigoriev,Uffe Hellsten,Nicholas H. Putnam,Steven G. Ralph,Stephane Rombauts,Asaf Salamov,Jacquie Schein,Lieven Sterck,Andrea Aerts,Rishikeshi Bhalerao,Rishikesh P. Bhalerao,Damien Blaudez,Wout Boerjan,Annick Brun,Amy M. Brunner,Victor Busov,Malcolm M. Campbell,John E. Carlson,Michel Chalot,Jarrod Chapman,G.-L. Chen,Dawn Cooper,Pedro M. Coutinho,Jérémy Couturier,Sarah F. Covert,Quentin C. B. Cronk,R. Cunningham,J. Davis,Sven Degroeve,Annabelle Déjardin,C. dePamphillis,John C. Detter,Bill Dirks,Inna Dubchak,Sébastien Duplessis,J. Ehiting,Brian E. Ellis,Karla C Gendler,David Goodstein,Michael Gribskov,Jane Grimwood,Andrew Groover,Lee E. Gunter,Björn Hamberger,Berthold Heinze,Yrjö Helariutta,Bernard Henrissat,D. Holligan,Robert A. Holt,Wenyu Huang,N. Islam-Faridi,Steven J.M. Jones,M. Jones-Rhoades,Richard A. Jorgensen,Chandrashekhar P. Joshi,Jaakko Kangasjärvi,Jan Karlsson,Colin T. Kelleher,Robert Kirkpatrick,Matias Kirst,Annegret Kohler,Udaya C. Kalluri,Frank W. Larimer,Jim Leebens-Mack,Jean-Charles Leplé,Philip F. LoCascio,Y. Lou,Susan Lucas,Francis Martin,Barbara Montanini,Carolyn A. Napoli,David R. Nelson,D. Nelson,Kaisa Nieminen,Ove Nilsson,Gary F. Peter,Ryan N. Philippe,Gilles Pilate,Alexander Poliakov,J. Razumovskaya,Paul G. Richardson +84 more
TL;DR: Analyzing the draft genome of the black cottonwood tree, Populus trichocarpa, revealed a whole-genome duplication event; about 8000 pairs of duplicated genes from that event survived in the Populus genome.
Journal ArticleDOI
Cytokinin signaling regulates cambial development in poplar
Kaisa Nieminen,Juha Immanen,Marjukka Laxell,Leila Kauppinen,Petr Tarkowski,Karel Dolezal,Sari Tähtiharju,Annakaisa Elo,Melanie Decourteix,Karin Ljung,Rishikesh P. Bhalerao,Kaija Keinonen,Victor A. Albert,Yrjö Helariutta +13 more
TL;DR: The results show that cytokinins are major hormonal regulators required for cambial development, and a reduced level of cytokinin signaling is the primary basis for the impaired cambIAL growth observed.
Journal ArticleDOI
Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch
Jarkko Salojärvi,Olli-Pekka Smolander,Kaisa Nieminen,Sitaram Rajaraman,Omid Safronov,Pezhman Safdari,Airi Lamminmäki,Juha Immanen,Tianying Lan,Jaakko Tanskanen,Pasi Rastas,Ali Amiryousefi,Balamuralikrishna Jayaprakash,Juhana Kammonen,Risto Hagqvist,Gugan Eswaran,Viivi Ahonen,Juan Antonio Alonso Serra,Fred O. Asiegbu,Juan de Dios Barajas-López,Daniel Blande,Olga Blokhina,Tiina Blomster,Suvi K. Broholm,Mikael Brosché,Mikael Brosché,Fuqiang Cui,Chris Dardick,Sanna Ehonen,Paula Elomaa,Sacha Escamez,Kurt V. Fagerstedt,Hiroaki Fujii,Adrien Gauthier,Peter J. Gollan,Pauliina Halimaa,Pekka Heino,Kristiina Himanen,Courtney A. Hollender,Saijaliisa Kangasjärvi,Leila Kauppinen,Colin T. Kelleher,Sari Kontunen-Soppela,J. Patrik Koskinen,Andriy Kovalchuk,Sirpa Kärenlampi,Anna Kärkönen,Kean-Jin Lim,Johanna Leppälä,Lee Macpherson,Juha Mikola,Katriina Mouhu,Ari Pekka Mähönen,Ülo Niinemets,Elina Oksanen,Kirk Overmyer,E. Tapio Palva,Leila Pazouki,Ville Pennanen,Tuula Puhakainen,Péter Poczai,Boy J.H.M. Possen,Matleena Punkkinen,Moona Rahikainen,Matti Rousi,Raili Ruonala,Christiaan van der Schoot,Alexey Shapiguzov,Alexey Shapiguzov,Maija Sierla,Timo Sipilä,Suvi Sutela,Teemu H. Teeri,Arja Tervahauta,Aleksia Vaattovaara,Jorma Vahala,Lidia Vetchinnikova,Annikki Welling,Michael Wrzaczek,Enjun Xu,Lars Paulin,Alan H. Schulman,Martin Lascoux,Victor A. Albert,Petri Auvinen,Ykä Helariutta,Jaakko Kangasjärvi +86 more
TL;DR: Variation around the tightly-linked light response genes PHYC and FRS10 correlated with latitude and longitude and temperature, and with precipitation for PHYC, and similar associations characterized the growth-promoting cytokinin response regulator ARR1, and the wood development genes KAK and MED5A.