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Colin T. Kelleher
Researcher at University of British Columbia
Publications - 30
Citations - 5295
Colin T. Kelleher is an academic researcher from University of British Columbia. The author has contributed to research in topics: Population & Genetic diversity. The author has an hindex of 16, co-authored 28 publications receiving 4637 citations. Previous affiliations of Colin T. Kelleher include University College Dublin.
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Journal ArticleDOI
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
Gerald A. Tuskan,Gerald A. Tuskan,Stephen P. DiFazio,Stephen P. DiFazio,Stefan Jansson,Joerg Bohlmann,Igor V. Grigoriev,Uffe Hellsten,Nicholas H. Putnam,Steven G. Ralph,Stephane Rombauts,Asaf Salamov,Jacquie Schein,Lieven Sterck,Andrea Aerts,Rishikeshi Bhalerao,Rishikesh P. Bhalerao,Damien Blaudez,Wout Boerjan,Annick Brun,Amy M. Brunner,Victor Busov,Malcolm M. Campbell,John E. Carlson,Michel Chalot,Jarrod Chapman,G.-L. Chen,Dawn Cooper,Pedro M. Coutinho,Jérémy Couturier,Sarah F. Covert,Quentin C. B. Cronk,R. Cunningham,John M. Davis,Sven Degroeve,Annabelle Déjardin,Claude W. dePamphilis,John C. Detter,Bill Dirks,Inna Dubchak,Inna Dubchak,Sébastien Duplessis,Jürgen Ehlting,Brian E. Ellis,Karla C Gendler,David Goodstein,Michael Gribskov,Jane Grimwood,Andrew Groover,Lee E. Gunter,Björn Hamberger,Berthold Heinze,Yrjö Helariutta,Yrjö Helariutta,Yrjö Helariutta,Bernard Henrissat,D. Holligan,Robert A. Holt,Wenyu Huang,N. Islam-Faridi,Steven J.M. Jones,M. Jones-Rhoades,Richard A. Jorgensen,Chandrashekhar P. Joshi,Jaakko Kangasjärvi,Jan Karlsson,Colin T. Kelleher,Robert Kirkpatrick,Matias Kirst,Annegret Kohler,Udaya C. Kalluri,Frank W. Larimer,Jim Leebens-Mack,Jean-Charles Leplé,Philip F. LoCascio,Y. Lou,Susan Lucas,Francis Martin,Barbara Montanini,Carolyn A. Napoli,David R. Nelson,C D Nelson,Kaisa Nieminen,Ove Nilsson,V. Pereda,Gary F. Peter,Ryan N. Philippe,Gilles Pilate,Alexander Poliakov,J. Razumovskaya,Paul G. Richardson,Cécile Rinaldi,Kermit Ritland,Pierre Rouzé,D. Ryaboy,Jeremy Schmutz,J. Schrader,Bo Segerman,H. Shin,Asim Siddiqui,Fredrik Sterky,Astrid Terry,Chung-Jui Tsai,Edward C. Uberbacher,Per Unneberg,Jorma Vahala,Kerr Wall,Susan R. Wessler,Guojun Yang,T. Yin,Carl J. Douglas,Marco A. Marra,Göran Sandberg,Y. Van de Peer,Daniel S. Rokhsar,Daniel S. Rokhsar +115 more
TL;DR: The draft genome of the black cottonwood tree, Populus trichocarpa, has been reported in this paper, with more than 45,000 putative protein-coding genes identified.
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) - eScholarship
Gerald A. Tuskan,Stephen P. DiFazio,Stefan Jansson,Joerg Bohlmann,Igor V. Grigoriev,Uffe Hellsten,Nicholas H. Putnam,Steven G. Ralph,Stephane Rombauts,Asaf Salamov,Jacquie Schein,Lieven Sterck,Andrea Aerts,Rishikeshi Bhalerao,Rishikesh P. Bhalerao,Damien Blaudez,Wout Boerjan,Annick Brun,Amy M. Brunner,Victor Busov,Malcolm M. Campbell,John E. Carlson,Michel Chalot,Jarrod Chapman,G.-L. Chen,Dawn Cooper,Pedro M. Coutinho,Jérémy Couturier,Sarah F. Covert,Quentin C. B. Cronk,R. Cunningham,J. Davis,Sven Degroeve,Annabelle Déjardin,C. dePamphillis,John C. Detter,Bill Dirks,Inna Dubchak,Sébastien Duplessis,J. Ehiting,Brian E. Ellis,Karla C Gendler,David Goodstein,Michael Gribskov,Jane Grimwood,Andrew Groover,Lee E. Gunter,Björn Hamberger,Berthold Heinze,Yrjö Helariutta,Bernard Henrissat,D. Holligan,Robert A. Holt,Wenyu Huang,N. Islam-Faridi,Steven J.M. Jones,M. Jones-Rhoades,Richard A. Jorgensen,Chandrashekhar P. Joshi,Jaakko Kangasjärvi,Jan Karlsson,Colin T. Kelleher,Robert Kirkpatrick,Matias Kirst,Annegret Kohler,Udaya C. Kalluri,Frank W. Larimer,Jim Leebens-Mack,Jean-Charles Leplé,Philip F. LoCascio,Y. Lou,Susan Lucas,Francis Martin,Barbara Montanini,Carolyn A. Napoli,David R. Nelson,D. Nelson,Kaisa Nieminen,Ove Nilsson,Gary F. Peter,Ryan N. Philippe,Gilles Pilate,Alexander Poliakov,J. Razumovskaya,Paul G. Richardson +84 more
TL;DR: Analyzing the draft genome of the black cottonwood tree, Populus trichocarpa, revealed a whole-genome duplication event; about 8000 pairs of duplicated genes from that event survived in the Populus genome.
Journal ArticleDOI
Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch
Jarkko Salojärvi,Olli-Pekka Smolander,Kaisa Nieminen,Sitaram Rajaraman,Omid Safronov,Pezhman Safdari,Airi Lamminmäki,Juha Immanen,Tianying Lan,Jaakko Tanskanen,Pasi Rastas,Ali Amiryousefi,Balamuralikrishna Jayaprakash,Juhana Kammonen,Risto Hagqvist,Gugan Eswaran,Viivi Ahonen,Juan Antonio Alonso Serra,Fred O. Asiegbu,Juan de Dios Barajas-López,Daniel Blande,Olga Blokhina,Tiina Blomster,Suvi K. Broholm,Mikael Brosché,Mikael Brosché,Fuqiang Cui,Chris Dardick,Sanna Ehonen,Paula Elomaa,Sacha Escamez,Kurt V. Fagerstedt,Hiroaki Fujii,Adrien Gauthier,Peter J. Gollan,Pauliina Halimaa,Pekka Heino,Kristiina Himanen,Courtney A. Hollender,Saijaliisa Kangasjärvi,Leila Kauppinen,Colin T. Kelleher,Sari Kontunen-Soppela,J. Patrik Koskinen,Andriy Kovalchuk,Sirpa Kärenlampi,Anna Kärkönen,Kean-Jin Lim,Johanna Leppälä,Lee Macpherson,Juha Mikola,Katriina Mouhu,Ari Pekka Mähönen,Ülo Niinemets,Elina Oksanen,Kirk Overmyer,E. Tapio Palva,Leila Pazouki,Ville Pennanen,Tuula Puhakainen,Péter Poczai,Boy J.H.M. Possen,Matleena Punkkinen,Moona Rahikainen,Matti Rousi,Raili Ruonala,Christiaan van der Schoot,Alexey Shapiguzov,Alexey Shapiguzov,Maija Sierla,Timo Sipilä,Suvi Sutela,Teemu H. Teeri,Arja Tervahauta,Aleksia Vaattovaara,Jorma Vahala,Lidia Vetchinnikova,Annikki Welling,Michael Wrzaczek,Enjun Xu,Lars Paulin,Alan H. Schulman,Martin Lascoux,Victor A. Albert,Petri Auvinen,Ykä Helariutta,Jaakko Kangasjärvi +86 more
TL;DR: Variation around the tightly-linked light response genes PHYC and FRS10 correlated with latitude and longitude and temperature, and with precipitation for PHYC, and similar associations characterized the growth-promoting cytokinin response regulator ARR1, and the wood development genes KAK and MED5A.
Journal ArticleDOI
Evolution-based approach needed for the conservation and silviculture of peripheral forest tree populations
Bruno Fady,Filippos A. Aravanopoulos,Paraskevi Alizoti,Csaba Mátyás,Georg von Wühlisch,Marjana Westergren,Piero Belletti,Branislav Cvjetković,Fulvio Ducci,Gerhard Huber,Colin T. Kelleher,Abdelhamid Khaldi,Magda Bou Dagher Kharrat,Hojka Kraigher,Koen Kramer,Urs Mühlethaler,Sanja Perić,Annika Perry,Matti Rousi,Hassan Sbay,Srdjan Stojnic,Martina Tijardović,Ivaylo Tsvetkov,Maria Carolina Varela,Giovanni G. Vendramin,Tzvetan Zlatanov +25 more
TL;DR: In this paper, the authors review the genetic and ecological processes acting on different types of peripheral populations and indicate why these processes may be of general interest for adapting forests and forest management to climate change.
Journal ArticleDOI
A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.
Colin T. Kelleher,Readman Chiu,Heesun Shin,Ian Bosdet,Martin Krzywinski,Chris Fjell,Jennifer Wilkin,Tongming Yin,Stephen P. DiFazio,Johar Ali,Jennifer Asano,Susanna Chan,Alison Cloutier,Noreen Girn,Stephen Leach,Darlene Lee,Carrie Mathewson,Teika Olson,Katie O’Connor,Anna-Liisa Prabhu,Duane E. Smailus,Jeffery M. Stott,Miranda Tsai,Natasja Wye,George S. Yang,Jun Zhuang,Robert A. Holt,Nicholas H. Putnam,Julia Vrebalov,James J. Giovannoni,Jane Grimwood,Jeremy Schmutz,Daniel S. Rokhsar,Steven J.M. Jones,Marco A. Marra,Gerald A. Tuskan,Jörg Bohlmann,Brian E. Ellis,Kermit Ritland,Carl J. Douglas,Jacqueline E. Schein +40 more
TL;DR: Targeted sequencing of BAC clones and genetic analysis in a small number of representative regions showed that these co-aligning contigs represent distinct haplotypes in the heterozygous individual sequenced, and revealed the nature of these haplotype sequence differences.