L
Linda S. Thompson
Researcher at Los Alamos National Laboratory
Publications - 14
Citations - 1693
Linda S. Thompson is an academic researcher from Los Alamos National Laboratory. The author has contributed to research in topics: Gene & Bacillus thuringiensis. The author has an hindex of 11, co-authored 14 publications receiving 1582 citations. Previous affiliations of Linda S. Thompson include Joint Genome Institute.
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Journal ArticleDOI
Ecological Genomics of Marine Roseobacters
Mary Ann Moran,Robert Belas,Miranda Schell,José M. González,F. Sun,Shulei Sun,Brian J. Binder,Jennifer W. Edmonds,Wenying Ye,Beth N. Orcutt,Erinn C. Howard,Christof Meile,W. Palefsky,Alexander Goesmann,Qinghu Ren,Ian T. Paulsen,Luke E. Ulrich,Linda S. Thompson,Elizabeth Saunders,Alison Buchan +19 more
TL;DR: Comparative genome sequence analysis of three cultured Roseobacter representatives suggests that cellular requirements for nitrogen are largely provided by regenerated ammonium and organic compounds, while typical sources of carbon include amino acids, glyoxylate, and aromatic metabolites.
Journal ArticleDOI
The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea
Irene Wagner-Döbler,Britta Ballhausen,Martine Berger,Thorsten Brinkhoff,Ina Buchholz,Boyke Bunk,Heribert Cypionka,Rolf Daniel,Thomas Drepper,Gunnar Gerdts,Sarah Hahnke,Cliff Han,Dieter Jahn,Daniela Kalhoefer,Hajnalka Kiss,Hans-Peter Klenk,Nikos C. Kyrpides,Wolfgang Liebl,Heiko Liesegang,Linda Meincke,Amrita Pati,Jörn Petersen,Tanja Piekarski,Claudia Pommerenke,Silke Pradella,Rüdiger Pukall,Ralf Rabus,Erko Stackebrandt,Sebastian Thole,Linda S. Thompson,Petra Tielen,Jürgen Tomasch,Mathias von Jan,Nittaya Wanphrut,Antje Wichels,Hajo Zech,Meinhard Simon +36 more
TL;DR: Dinoroseobacter shibae DFL12T, a member of the globally important marine Roseobacter clade, comprises symbionts of cosmopolitan marine microalgae, including toxic dinoflagellates, and shows the most complex viral defense system of all Rhodobacterales sequenced to date.
Journal ArticleDOI
Pathogenomic Sequence Analysis of Bacillus cereus and Bacillus thuringiensis Isolates Closely Related to Bacillus anthracis
Cliff Han,Gary Xie,Jean F. Challacombe,Michael R. Altherr,Smriti S. Bhotika,David Bruce,Connie S. Campbell,Mary L. Campbell,Jin Chen,Olga Chertkov,Cathy Cleland,Mira Dimitrijevic,Norman A. Doggett,John J. Fawcett,Tijana Glavina,Tijana Glavina,Lynne Goodwin,Karen K. Hill,Penny Hitchcock,Paul J. Jackson,Paul J. Jackson,Paul Keim,Avinash Ramesh Kewalramani,Jon Longmire,Susan Lucas,Susan Lucas,Stephanie Malfatti,Stephanie Malfatti,Kim McMurry,Linda Meincke,Monica Misra,Bernice L. Moseman,Mark Mundt,A. Christine Munk,Richard T. Okinaka,B. Parson-Quintana,Lee Philip Reilly,Paul Richardson,Paul Richardson,Donna L. Robinson,Eddy Rubin,Eddy Rubin,Elizabeth Saunders,Roxanne Tapia,Judith G. Tesmer,Nina Thayer,Linda S. Thompson,Hope Tice,Hope Tice,Lawrence O. Ticknor,Patti L. Wills,Thomas Brettin,Paul Gilna +52 more
TL;DR: Comparison of the genomes of two members of the B. cereus group revealed differences in terms of virulence, metabolic competence, structural components, and regulatory mechanisms, as well as shared and unique genes among these isolates in comparison to the genome of pathogenic strains B. anthracis Ames and B. cerealus.
Journal ArticleDOI
Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii.
Gary Xie,Gary Xie,David Bruce,David Bruce,Jean F. Challacombe,Jean F. Challacombe,Olga Chertkov,Olga Chertkov,John C. Detter,John C. Detter,Paul Gilna,Paul Gilna,Cliff Han,Cliff Han,Susan Lucas,Susan Lucas,Monica Misra,Gerald Myers,Paul Richardson,Paul Richardson,Roxanne Tapia,Roxanne Tapia,Nina Thayer,Linda S. Thompson,Linda S. Thompson,Thomas Brettin,Thomas Brettin,Bernard Henrissat,David Wilson,Mark J. McBride +29 more
TL;DR: The complete DNA sequence of the aerobic cellulolytic soil bacterium Cytophaga hutchinsonii, which belongs to the phylum Bacteroidetes, is presented and many genes thought to encode proteins involved in cellulose utilization were identified.
Journal ArticleDOI
The sequence and analysis of duplication-rich human chromosome 16
Joel Martin,Cliff Han,Laurie Gordon,Astrid Terry,Shyam Prabhakar,Xinwei She,Gary Xie,Gary Xie,Uffe Hellsten,Yee Man Chan,Michael R. Altherr,Michael R. Altherr,Olivier Couronne,Andrea Aerts,Eva Bajorek,Stacey Black,Heather Blumer,Elbert Branscomb,Elbert Branscomb,Nancy C. Brown,William J. Bruno,Judith M. Buckingham,David F. Callen,Connie S. Campbell,Mary L. Campbell,E.W. Campbell,Chenier Caoile,Jean F. Challacombe,Leslie Chasteen,Olga Chertkov,Han C. Chi,Mari Christensen,Lynn M. Clark,Judith D. Cohn,Mirian Denys,John C. Detter,Mark Dickson,Mira Dimitrijevic-Bussod,Julio Escobar,Joseph J. Fawcett,Dave Flowers,Dea Fotopulos,Tijana Glavina,Maria Gomez,Eidelyn Gonzales,David Goodstein,Lynne Goodwin,Deborah L. Grady,Igor V. Grigoriev,Matthew Groza,Nancy Hammon,Trevor Hawkins,Lauren Haydu,C.E. Hildebrand,Wayne Huang,Sanjay Israni,Jamie Jett,Phillip B. Jewett,Kristen Kadner,Heather Kimball,Arthur Kobayashi,Arthur Kobayashi,Marie-Claude Krawczyk,Tina Leyba,Jonathan L. Longmire,Frederick Lopez,Yunian Lou,Steve Lowry,Thom Ludeman,Chitra Manohar,Graham A. Mark,Kimberly L. Mcmurray,Linda Meincke,Jenna Morgan,Robert K. Moyzis,Mark Mundt,A. Christine Munk,Richard D. Nandkeshwar,Sam Pitluck,Martin Pollard,Paul Predki,B. Parson-Quintana,Lucía Ramírez,Sam Rash,James Retterer,Darryl O. Ricke,Donna L. Robinson,Alex Rodriguez,Asaf Salamov,Elizabeth Saunders,D. Scott,Timothy Shough,Raymond L. Stallings,Malinda Stalvey,Robert D. Sutherland,Roxanne Tapia,Judith G. Tesmer,Nina Thayer,Nina Thayer,Linda S. Thompson,Hope Tice,David C. Torney,Mary Bao Tran-Gyamfi,Ming Tsai,Levy E. Ulanovsky,Anna Ustaszewska,Nu Vo,P. Scott White,Albert L. Williams,Patricia L. Wills,Jung-Rung Wu,Kevin Wu,Joan Yang,Pieter J. deJong,David Bruce,Norman A. Doggett,Larry L. Deaven,Jeremy Schmutz,Jane Grimwood,Paul G. Richardson,Daniel S. Rokhsar,Evan E. Eichler,Paul Gilna,Susan Lucas,Richard M. Myers,Edward M. Rubin,Edward M. Rubin,Len A. Pennacchio,Len A. Pennacchio +128 more
TL;DR: The 78,884,754 base pairs of finished chromosome 16 sequence, representing over 99.9% of its euchromatin, revealed 880 protein-coding genes, including metallothionein, cadherin and iroquois gene families, as well as the disease genes for polycystic kidney disease and acute myelomonocytic leukaemia.