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Alex Rodriguez
Researcher at Stanford University
Publications - 9
Citations - 3849
Alex Rodriguez is an academic researcher from Stanford University. The author has contributed to research in topics: Chromosome 16 & cDNA library. The author has an hindex of 8, co-authored 9 publications receiving 3676 citations. Previous affiliations of Alex Rodriguez include Baxter International.
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Journal ArticleDOI
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Robert L. Strausberg,Elise A. Feingold,Lynette H. Grouse,Jeffery G. Derge,Richard D. Klausner,Francis S. Collins,Lukas Wagner,Carolyn M. Shenmen,Gregory D. Schuler,Stephen F. Altschul,Barry R. Zeeberg,Kenneth H. Buetow,Carl F. Schaefer,Narayan K. Bhat,Ralph F. Hopkins,Heather Jordan,Troy Moore,Steve I Max,Jun Wang,Florence Hsieh,Luda Diatchenko,Kate Marusina,Andrew A Farmer,Gerald M. Rubin,Ling Hong,Mark Stapleton,M. Bento Soares,Maria de Fatima Bonaldo,Thomas L. Casavant,Todd E. Scheetz,Michael J. Brownstein,Ted B. Usdin,Shiraki Toshiyuki,Piero Carninci,Christa Prange,Sam S Raha,Naomi A Loquellano,Garrick J Peters,Rick D Abramson,Sara J Mullahy,Stephanie Bosak,Paul J. McEwan,Kevin McKernan,Joel A. Malek,Preethi H. Gunaratne,Stephen Richards,Kim C. Worley,Sarah Hale,Angela M. Garcia,Stephen W. Hulyk,Debbie K Villalon,Donna M. Muzny,Erica Sodergren,Xiuhua Lu,Richard A. Gibbs,Jessica Fahey,Erin Helton,Mark Ketteman,Anuradha Madan,Stephanie Rodrigues,Amy Sanchez,Michelle Whiting,Anup Madan,Alice C. Young,Yuriy O. Shevchenko,Gerard G. Bouffard,Robert W. Blakesley,Jeffrey W. Touchman,Eric D. Green,Mark Dickson,Alex Rodriguez,Jane Grimwood,Jeremy Schmutz,Richard M. Myers,Yaron S.N. Butterfield,Martin Krzywinski,Ursula Skalska,Duane E. Smailus,Angelique Schnerch,Jacqueline E. Schein,Steven J.M. Jones,Marco A. Marra +81 more
TL;DR: The National Institutes of Health Mammalian Gene Collection (MGC) Program is a multiinstitutional effort to identify and sequence a cDNA clone containing a complete ORF for each human and mouse gene.
Journal ArticleDOI
The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)
Daniela S. Gerhard,Lukas Wagner,Elise A. Feingold,Carolyn M. Shenmen,Lynette H. Grouse,Greg Schuler,Steven L. Klein,Susan Old,Rebekah S. Rasooly,Peter J. Good,Mark S. Guyer,Allison M. Peck,Jeffery G. Derge,David J. Lipman,Francis S. Collins,Wonhee Jang,Steven Sherry,Mike Feolo,Leonie Misquitta,Eduardo Lee,Kirill Rotmistrovsky,Susan F. Greenhut,Carl F. Schaefer,Kenneth H. Buetow,Tom I. Bonner,David Haussler,Jim Kent,Mark Diekhans,Terry Furey,Michael R. Brent,Christa Prange,Kirsten Schreiber,Nicole Shapiro,Narayan K. Bhat,Ralph F. Hopkins,Florence Hsie,Tom Driscoll,M. Bento Soares,Maria de Fatima Bonaldo,Thomas L. Casavant,Todd E. Scheetz,Michael J. Brownstein,Ted B. Usdin,Shiraki Toshiyuki,Piero Carninci,Yulan Piao,Dawood B. Dudekula,Minoru S.H. Ko,Koichi Kawakami,Yutaka Suzuki,Sumio Sugano,C. E. Gruber,M. R. Smith,Blake A. Simmons,Troy Moore,Richard C. Waterman,Stephen L. Johnson,Yijun Ruan,Chia-Lin Wei,Sinnakaruppan Mathavan,Preethi H. Gunaratne,Jia Qian Wu,Angela M. Garcia,Stephen W. Hulyk,Edwin Fuh,Ye Yuan,Anna Sneed,Carla Kowis,Anne Hodgson,Donna M. Muzny,John Douglas Mcpherson,Richard A. Gibbs,Jessica Fahey,Jessica Fahey,Erin Helton,Mark Ketteman,Anuradha Madan,Anuradha Madan,Stephanie Rodrigues,Stephanie Rodrigues,Amy Sanchez,Michelle Whiting,Anup Madan,Anup Madan,Alice C. Young,Keith Wetherby,Steven J. Granite,Peggy N. Kwong,Charles P. Brinkley,Russell L. Pearson,Gerard G. Bouffard,Robert W. Blakesly,Eric D. Green,Mark Dickson,Alex Rodriguez,Jane Grimwood,Jeremy Schmutz,Richard M. Myers,Yaron S.N. Butterfield,Malachi Griffith,Obi L. Griffith,Martin Krzywinski,Nancy Y. Liao,Ryan Morrin,Diana L. Palmquist,Anca Petrescu,Ursula Skalska,Duane E. Smailus,Jeff M. Stott,Angelique Schnerch,Jacqueline E. Schein,Steven J.M. Jones,Robert A. Holt,Agnes Baross,Marco A. Marra,Sandra W. Clifton,Kathryn A. Makowski,Stephanie Bosak,Joel A. Malek +118 more
TL;DR: Comparison of the sequence of the MGC clones to reference genome sequences reveals that most cDNA clones are of very high sequence quality, although it is likely that some cDNAs may carry missense variants as a consequence of experimental artifact, such as PCR, cloning, or reverse transcriptase errors.
Journal ArticleDOI
The DNA sequence and biology of human chromosome 19
Jane Grimwood,Laurie Gordon,Laurie Gordon,Anne S. Olsen,Anne S. Olsen,Astrid Terry,Jeremy Schmutz,Jane Lamerdin,Jane Lamerdin,Uffe Hellsten,David Goodstein,Olivier Couronne,Mary Bao Tran-Gyamfi,Mary Bao Tran-Gyamfi,Andrea Aerts,Michael R. Altherr,Michael R. Altherr,Linda K. Ashworth,Linda K. Ashworth,Eva Bajorek,Stacey Black,Elbert Branscomb,Elbert Branscomb,Sean Caenepeel,Anthony V. Carrano,Anthony V. Carrano,Chenier Caoile,Yee Man Chan,Mari Christensen,Mari Christensen,Catherine A. Cleland,Catherine A. Cleland,Alex Copeland,Eileen Dalin,Paramvir S. Dehal,Mirian Denys,John C. Detter,Julio Escobar,Dave Flowers,Dea Fotopulos,Carmen Rosa Albacete García,Anca M. Georgescu,Anca M. Georgescu,Tijana Glavina,Maria Gomez,Eidelyn Gonzales,Matthew Groza,Matthew Groza,Nancy Hammon,Trevor Hawkins,Lauren Haydu,Isaac Ho,Wayne Huang,Sanjay Israni,Jamie Jett,Kristen Kadner,Heather Kimball,Arthur Kobayashi,Arthur Kobayashi,Vladimer Larionov,Sun-Hee Leem,Frederick Lopez,Yunian Lou,Steve Lowry,Stephanie Malfatti,Stephanie Malfatti,Diego Martinez,Paula McCready,Paula McCready,Catherine Medina,Jenna Morgan,Kathryn Nelson,Kathryn Nelson,Matt Nolan,Ivan Ovcharenko,Ivan Ovcharenko,Sam Pitluck,Martin Pollard,Anthony P. Popkie,Paul Predki,Glenda Quan,Glenda Quan,Lucía Ramírez,Sam Rash,James Retterer,Alex Rodriguez,Stephanine Rogers,Asaf Salamov,Angelica Salazar,Xinwei She,Doug Smith,Tom Slezak,Tom Slezak,Victor V. Solovyev,Nina Thayer,Nina Thayer,Hope Tice,Ming Tsai,Anna Ustaszewska,Nu Vo,Mark C. Wagner,Mark C. Wagner,Jeremy Wheeler,Kevin Wu,Gary Xie,Gary Xie,Joan Yang,Inna Dubchak,Terrence S. Furey,Pieter J. deJong,Mark Dickson,David Gordon,Evan E. Eichler,Len A. Pennacchio,Paul G. Richardson,Lisa Stubbs,Lisa Stubbs,Daniel S. Rokhsar,Richard M. Myers,Edward M. Rubin,Susan Lucas +120 more
TL;DR: Comparative analyses show a fascinating picture of conservation and divergence, revealing large blocks of gene orthology with rodents, scattered regions with more recent gene family expansions and deletions, and segments of coding and non-coding conservation with the distant fish species Takifugu.
Journal ArticleDOI
Quality assessment of the human genome sequence
Jeremy Schmutz,Jeremy Wheeler,Jane Grimwood,Mark Dickson,Joan Yang,Chenier Caoile,Eva Bajorek,Stacey Black,Yee Man Chan,Mirian Denys,Julio Escobar,Dave Flowers,Dea Fotopulos,Carmen Rosa Albacete García,M. Gómez,Eidelyn Gonzales,Lauren Haydu,Frederick Lopez,Lucía Ramírez,James Retterer,Alex Rodriguez,Stephanie Rogers,Angelica Salazar,Ming Tsai,Richard M. Myers +24 more
TL;DR: The results of the largest examination of the quality of the finished DNA sequence are presented, based on a rigorous combination of laboratory experiments and computational analysis.
Journal ArticleDOI
The sequence and analysis of duplication-rich human chromosome 16
Joel Martin,Cliff Han,Laurie Gordon,Astrid Terry,Shyam Prabhakar,Xinwei She,Gary Xie,Gary Xie,Uffe Hellsten,Yee Man Chan,Michael R. Altherr,Michael R. Altherr,Olivier Couronne,Andrea Aerts,Eva Bajorek,Stacey Black,Heather Blumer,Elbert Branscomb,Elbert Branscomb,Nancy C. Brown,William J. Bruno,Judith M. Buckingham,David F. Callen,Connie S. Campbell,Mary L. Campbell,E.W. Campbell,Chenier Caoile,Jean F. Challacombe,Leslie Chasteen,Olga Chertkov,Han C. Chi,Mari Christensen,Lynn M. Clark,Judith D. Cohn,Mirian Denys,John C. Detter,Mark Dickson,Mira Dimitrijevic-Bussod,Julio Escobar,Joseph J. Fawcett,Dave Flowers,Dea Fotopulos,Tijana Glavina,Maria Gomez,Eidelyn Gonzales,David Goodstein,Lynne Goodwin,Deborah L. Grady,Igor V. Grigoriev,Matthew Groza,Nancy Hammon,Trevor Hawkins,Lauren Haydu,C.E. Hildebrand,Wayne Huang,Sanjay Israni,Jamie Jett,Phillip B. Jewett,Kristen Kadner,Heather Kimball,Arthur Kobayashi,Arthur Kobayashi,Marie-Claude Krawczyk,Tina Leyba,Jonathan L. Longmire,Frederick Lopez,Yunian Lou,Steve Lowry,Thom Ludeman,Chitra Manohar,Graham A. Mark,Kimberly L. Mcmurray,Linda Meincke,Jenna Morgan,Robert K. Moyzis,Mark Mundt,A. Christine Munk,Richard D. Nandkeshwar,Sam Pitluck,Martin Pollard,Paul Predki,B. Parson-Quintana,Lucía Ramírez,Sam Rash,James Retterer,Darryl O. Ricke,Donna L. Robinson,Alex Rodriguez,Asaf Salamov,Elizabeth Saunders,D. Scott,Timothy Shough,Raymond L. Stallings,Malinda Stalvey,Robert D. Sutherland,Roxanne Tapia,Judith G. Tesmer,Nina Thayer,Nina Thayer,Linda S. Thompson,Hope Tice,David C. Torney,Mary Bao Tran-Gyamfi,Ming Tsai,Levy E. Ulanovsky,Anna Ustaszewska,Nu Vo,P. Scott White,Albert L. Williams,Patricia L. Wills,Jung-Rung Wu,Kevin Wu,Joan Yang,Pieter J. deJong,David Bruce,Norman A. Doggett,Larry L. Deaven,Jeremy Schmutz,Jane Grimwood,Paul G. Richardson,Daniel S. Rokhsar,Evan E. Eichler,Paul Gilna,Susan Lucas,Richard M. Myers,Edward M. Rubin,Edward M. Rubin,Len A. Pennacchio,Len A. Pennacchio +128 more
TL;DR: The 78,884,754 base pairs of finished chromosome 16 sequence, representing over 99.9% of its euchromatin, revealed 880 protein-coding genes, including metallothionein, cadherin and iroquois gene families, as well as the disease genes for polycystic kidney disease and acute myelomonocytic leukaemia.