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Steve Lowry
Researcher at Joint Genome Institute
Publications - 7
Citations - 1093
Steve Lowry is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Chromosome 16 & Gene. The author has an hindex of 6, co-authored 7 publications receiving 1009 citations. Previous affiliations of Steve Lowry include United States Department of Energy.
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Journal ArticleDOI
The DNA sequence and biology of human chromosome 19
Jane Grimwood,Laurie Gordon,Laurie Gordon,Anne S. Olsen,Anne S. Olsen,Astrid Terry,Jeremy Schmutz,Jane Lamerdin,Jane Lamerdin,Uffe Hellsten,David Goodstein,Olivier Couronne,Mary Bao Tran-Gyamfi,Mary Bao Tran-Gyamfi,Andrea Aerts,Michael R. Altherr,Michael R. Altherr,Linda K. Ashworth,Linda K. Ashworth,Eva Bajorek,Stacey Black,Elbert Branscomb,Elbert Branscomb,Sean Caenepeel,Anthony V. Carrano,Anthony V. Carrano,Chenier Caoile,Yee Man Chan,Mari Christensen,Mari Christensen,Catherine A. Cleland,Catherine A. Cleland,Alex Copeland,Eileen Dalin,Paramvir S. Dehal,Mirian Denys,John C. Detter,Julio Escobar,Dave Flowers,Dea Fotopulos,Carmen Rosa Albacete García,Anca M. Georgescu,Anca M. Georgescu,Tijana Glavina,Maria Gomez,Eidelyn Gonzales,Matthew Groza,Matthew Groza,Nancy Hammon,Trevor Hawkins,Lauren Haydu,Isaac Ho,Wayne Huang,Sanjay Israni,Jamie Jett,Kristen Kadner,Heather Kimball,Arthur Kobayashi,Arthur Kobayashi,Vladimer Larionov,Sun-Hee Leem,Frederick Lopez,Yunian Lou,Steve Lowry,Stephanie Malfatti,Stephanie Malfatti,Diego Martinez,Paula McCready,Paula McCready,Catherine Medina,Jenna Morgan,Kathryn Nelson,Kathryn Nelson,Matt Nolan,Ivan Ovcharenko,Ivan Ovcharenko,Sam Pitluck,Martin Pollard,Anthony P. Popkie,Paul Predki,Glenda Quan,Glenda Quan,Lucía Ramírez,Sam Rash,James Retterer,Alex Rodriguez,Stephanine Rogers,Asaf Salamov,Angelica Salazar,Xinwei She,Doug Smith,Tom Slezak,Tom Slezak,Victor V. Solovyev,Nina Thayer,Nina Thayer,Hope Tice,Ming Tsai,Anna Ustaszewska,Nu Vo,Mark C. Wagner,Mark C. Wagner,Jeremy Wheeler,Kevin Wu,Gary Xie,Gary Xie,Joan Yang,Inna Dubchak,Terrence S. Furey,Pieter J. deJong,Mark Dickson,David Gordon,Evan E. Eichler,Len A. Pennacchio,Paul G. Richardson,Lisa Stubbs,Lisa Stubbs,Daniel S. Rokhsar,Richard M. Myers,Edward M. Rubin,Susan Lucas +120 more
TL;DR: Comparative analyses show a fascinating picture of conservation and divergence, revealing large blocks of gene orthology with rodents, scattered regions with more recent gene family expansions and deletions, and segments of coding and non-coding conservation with the distant fish species Takifugu.
Journal ArticleDOI
Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens
Bradford Condon,Yueqiang Leng,Dongliang Wu,Kathryn E. Bushley,Robin A. Ohm,Robert Otillar,Joel Martin,Wendy Schackwitz,Jane Grimwood,NurAinIzzati A I MohdZainudin,NurAinIzzati A I MohdZainudin,Chunsheng Xue,Chunsheng Xue,Rui Wang,Viola A. Manning,Braham Dhillon,Zheng Jin Tu,Brian J. Steffenson,Asaf Salamov,Hui Sun,Steve Lowry,Kurt LaButti,James Han,Alex Copeland,Erika Lindquist,Kerrie Barry,Jeremy Schmutz,Scott E. Baker,Lynda M. Ciuffetti,Igor V. Grigoriev,Shaobin Zhong,B. Gillian Turgeon +31 more
TL;DR: The genomes of five C. heterostrophus strains, two C. sativus strains and three additional C. species were sequenced at the Joint Genome Institute (JGI) to identify SNPs between strains and species, unique genomic regions, core secondary metabolism genes, and small secreted protein (SSP) candidate effector encoding genes as discussed by the authors.
Journal ArticleDOI
Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community
Martin Allgaier,Amitha P. Reddy,Amitha P. Reddy,Joshua I. Park,Joshua I. Park,Natalia Ivanova,Patrik D'haeseleer,Patrik D'haeseleer,Steve Lowry,Rajat Sapra,Rajat Sapra,Terry C. Hazen,Terry C. Hazen,Blake A. Simmons,Blake A. Simmons,Jean S. VanderGheynst,Jean S. VanderGheynst,Philip Hugenholtz,Philip Hugenholtz +18 more
TL;DR: It is demonstrated that microbial communities adapt to switchgrass decomposition using simulated composting condition and that full-length genes can be identified from complex metagenomic sequence data, synthesized and expressed resulting in active enzyme.
Journal ArticleDOI
The sequence and analysis of duplication-rich human chromosome 16
Joel Martin,Cliff Han,Laurie Gordon,Astrid Terry,Shyam Prabhakar,Xinwei She,Gary Xie,Gary Xie,Uffe Hellsten,Yee Man Chan,Michael R. Altherr,Michael R. Altherr,Olivier Couronne,Andrea Aerts,Eva Bajorek,Stacey Black,Heather Blumer,Elbert Branscomb,Elbert Branscomb,Nancy C. Brown,William J. Bruno,Judith M. Buckingham,David F. Callen,Connie S. Campbell,Mary L. Campbell,E.W. Campbell,Chenier Caoile,Jean F. Challacombe,Leslie Chasteen,Olga Chertkov,Han C. Chi,Mari Christensen,Lynn M. Clark,Judith D. Cohn,Mirian Denys,John C. Detter,Mark Dickson,Mira Dimitrijevic-Bussod,Julio Escobar,Joseph J. Fawcett,Dave Flowers,Dea Fotopulos,Tijana Glavina,Maria Gomez,Eidelyn Gonzales,David Goodstein,Lynne Goodwin,Deborah L. Grady,Igor V. Grigoriev,Matthew Groza,Nancy Hammon,Trevor Hawkins,Lauren Haydu,C.E. Hildebrand,Wayne Huang,Sanjay Israni,Jamie Jett,Phillip B. Jewett,Kristen Kadner,Heather Kimball,Arthur Kobayashi,Arthur Kobayashi,Marie-Claude Krawczyk,Tina Leyba,Jonathan L. Longmire,Frederick Lopez,Yunian Lou,Steve Lowry,Thom Ludeman,Chitra Manohar,Graham A. Mark,Kimberly L. Mcmurray,Linda Meincke,Jenna Morgan,Robert K. Moyzis,Mark Mundt,A. Christine Munk,Richard D. Nandkeshwar,Sam Pitluck,Martin Pollard,Paul Predki,B. Parson-Quintana,Lucía Ramírez,Sam Rash,James Retterer,Darryl O. Ricke,Donna L. Robinson,Alex Rodriguez,Asaf Salamov,Elizabeth Saunders,D. Scott,Timothy Shough,Raymond L. Stallings,Malinda Stalvey,Robert D. Sutherland,Roxanne Tapia,Judith G. Tesmer,Nina Thayer,Nina Thayer,Linda S. Thompson,Hope Tice,David C. Torney,Mary Bao Tran-Gyamfi,Ming Tsai,Levy E. Ulanovsky,Anna Ustaszewska,Nu Vo,P. Scott White,Albert L. Williams,Patricia L. Wills,Jung-Rung Wu,Kevin Wu,Joan Yang,Pieter J. deJong,David Bruce,Norman A. Doggett,Larry L. Deaven,Jeremy Schmutz,Jane Grimwood,Paul G. Richardson,Daniel S. Rokhsar,Evan E. Eichler,Paul Gilna,Susan Lucas,Richard M. Myers,Edward M. Rubin,Edward M. Rubin,Len A. Pennacchio,Len A. Pennacchio +128 more
TL;DR: The 78,884,754 base pairs of finished chromosome 16 sequence, representing over 99.9% of its euchromatin, revealed 880 protein-coding genes, including metallothionein, cadherin and iroquois gene families, as well as the disease genes for polycystic kidney disease and acute myelomonocytic leukaemia.
Journal Article
The sequence and analysis of duplication rich human chromosome 16
Joel Martin,Cliff Han,Laurie Gordon,Astrid Terry,Shyam Prabhakar,Xinwei She,Gary Xie,Uffe Hellsten,Yee Man Chan,Michael R. Altherr,Olivier Couronne,Andrea Aerts,Eva Bajorek,Stacey Black,Heather Blumer,Elbert Branscomb,Nancy C. Brown,William J. Bruno,Judith M. Buckingham,David F. Callen,Connie S. Campbell,Mary L. Campbell,E.W. Campbell,Chenier Caoile,Jean F. Challacombe,Leslie Chasteen,Olga Chertkov,Han C. Chi,Mari Christensen,Lynn M. Clark,Judith D. Cohn,Mirian Denys,John C. Detter,Mark Dickson,Mira Dimitrijevic-Bussod,Julio Escobar,Joseph J. Fawcett,Dave Flowers,Dea Fotopulos,Tijana Glavina,María Laura Ríos Gómez,Eidelyn Gonzales,David Goodstein,Lynne Goodwin,Deborah L. Grady,Igor V. Grigoriev,Matthew Groza,Nancy Hammon,Trevor Hawkins,Lauren Haydu,C.E. Hildebrand,Wayne Huang,Sanjay Israni,Jamie Jett,Phillip E. Jewett,Kristen Kadner,Heather Kimball,Arthur Kobayashi,Marie-Claude Krawczyk,Tina Leyba,Jonathan L. Longmire,Frederick Lopez,Yunian Lou,Steve Lowry,Thom Ludeman,Graham A. Mark,Kimberly L. Mcmurray,Linda Meincke,Jenna Morgan,Robert K. Moyzis,Mark Mundt,A. Christine Munk,Richard D. Nandkeshwar,Sam Pitluck,Martin O. Pollard,Paul Predki,B. Parson-Quintana,Lucía Ramírez,Sam Rash,James Retterer,Darryl O. Ricke,Donna L. Robinson,Alex Rodriguez,Asaf Salamov,Elizabeth Saunders,D. Scott,Timothy Shough,Raymond L. Stallings,Malinda Stalvey,Robert D. Sutherland,Roxanne Tapia,Judith G. Tesmer,Nina Thayer,Linda S. Thompson,Hope Tice,David C. Torney,Mary Bao Tran-Gyamfi,Ming Tsai,Levy E. Ulanovsky,Anna Ustaszewska,Nu Vo,P. Scott White,Albert L. Williams,Patricia L. Wills,Jung-Rung Wu,Kevin Wu,Joan Yang,Pieter J. deJong,David Bruce,Norman A. Doggett,Larry L. Deaven,Jeremy Schmutz,Jane Grimwood,Paul G. Richardson,Daniel S. Rokhsar,Evan E. Eichler,Paul Gilna,Susan Lucas,Richard M. Myers,Edward M. Rubin,Len A. Pennacchio +120 more
TL;DR: In this paper, the authors reported the 78,884,754 base pairs of the human chromosome 16 sequence, representing over 99.9 percent of its euchromatin, were annotated with 880 protein coding genes.