M
Markus List
Researcher at Technische Universität München
Publications - 110
Citations - 2574
Markus List is an academic researcher from Technische Universität München. The author has contributed to research in topics: Biology & Computer science. The author has an hindex of 17, co-authored 77 publications receiving 1189 citations. Previous affiliations of Markus List include Max Planck Society & University of Southern Denmark.
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Journal ArticleDOI
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
Gregor Sturm,Francesca Finotello,Florent Petitprez,Jitao David Zhang,Jan Baumbach,Wolf H. Fridman,Markus List,Tatsiana Aneichyk +7 more
TL;DR: It is demonstrated that computational deconvolution performs at high accuracy for well-defined cell- type signatures and proposed how fuzzy cell-type signatures can be improved, and suggested that future efforts should be dedicated to refining cell population definitions and finding reliable signatures.
Journal ArticleDOI
Mass-spectrometry-based draft of the Arabidopsis proteome.
Julia Mergner,Martin Frejno,Markus List,Michael Papacek,Xia Chen,Ajeet Chaudhary,Patroklos Samaras,Sandra Richter,Hiromasa Shikata,Hiromasa Shikata,Maxim Messerer,Daniel Lang,Stefan Altmann,Philipp Cyprys,Daniel P Zolg,Toby Mathieson,Marcus Bantscheff,Rashmi R. Hazarika,Tobias Schmidt,Corinna Dawid,Andreas Dunkel,Thomas Hofmann,Stefanie Sprunck,Pascal Falter-Braun,Frank Johannes,Klaus F. X. Mayer,Gerd Jürgens,Mathias Wilhelm,Jan Baumbach,Erwin Grill,Kay Schneitz,Claus Schwechheimer,Bernhard Kuster +32 more
TL;DR: A quantitative atlas of the transcriptomes, proteomes and phosphoproteomes of 30 tissues of the model plant Arabidopsis thaliana provides a valuable resource for plant research.
Journal ArticleDOI
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing.
Sepideh Sadegh,Julian Matschinske,David Blumenthal,Gihanna Galindez,Tim Kacprowski,Markus List,Reza Nasirigerdeh,Mhaned Oubounyt,Andreas Pichlmair,Tim Daniel Rose,Marisol Salgado-Albarrán,Marisol Salgado-Albarrán,Julian Späth,Alexey Stukalov,Nina K. Wenke,Kevin Yuan,Josch K. Pauling,Jan Baumbach,Jan Baumbach +18 more
TL;DR: CoVex as discussed by the authors is an interactive online platform for SARS-CoV-2 host interactome exploration and drug (target) identification, which integrates virus-human protein interactions, human protein-protein interactions, and drug-target interactions.
Journal ArticleDOI
Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes.
Sandra Reitmeier,Silke Kiessling,Thomas Clavel,Thomas Clavel,Markus List,Eduardo L. Almeida,Tarini Shankar Ghosh,Klaus Neuhaus,Harald Grallert,Jakob Linseisen,Thomas Skurk,Beate Brandl,Taylor A. Breuninger,Martina Troll,Wolfgang Rathmann,Birgit Linkohr,Hans Hauner,Matthias Laudes,Andre Franke,Caroline I. Le Roy,Jordana T. Bell,Tim D. Spector,Jan Baumbach,Paul W. O'Toole,Annette Peters,Dirk Haller +25 more
TL;DR: A cohort-specific risk pattern of arrhythmic taxa enables classification and prediction of type 2 diabetes (T2D), suggesting a functional link between circadian rhythms and the microbiome in metabolic diseases.
Journal ArticleDOI
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Franziska Hufsky,Kevin Lamkiewicz,Alexandre Almeida,Abdel Aouacheria,Cecilia N. Arighi,Alex Bateman,Jan Baumbach,Niko Beerenwinkel,Christian Brandt,Marco Cacciabue,Sara Chuguransky,Oliver Drechsel,Robert D. Finn,Adrian Fritz,Stephan Fuchs,Georges Hattab,Anne-Christin Hauschild,Dominik Heider,Marie Hoffmann,Martin Hölzer,Stefan Hoops,Lars Kaderali,Ioanna Kalvari,Max von Kleist,Renó Kmiecinski,Denise Kühnert,Gorka Lasso,Pieter Libin,Markus List,Hannah F. Löchel,Maria Jesus Martin,Roman Martin,Julian Matschinske,Alice C. McHardy,Pedro Mendes,Jaina Mistry,Vincent Navratil,Eric P. Nawrocki,Áine O'Toole,Nancy Ontiveros-Palacios,Anton I. Petrov,Guillermo Rangel-Pineros,Nicole Redaschi,Susanne Reimering,Knut Reinert,Alejandro Reyes,Lorna Richardson,David Robertson,Sepideh Sadegh,Joshua B Singer,Kristof Theys,Chris Upton,Marius Welzel,Lowri Williams,Manja Marz +54 more
TL;DR: Bioinformatics workflows and tools for the routine detection of SARS-CoV-2 infection, the reliable analysis of sequencing data, the tracking of the COVID-19 pandemic and evaluation of containment measures, the study of coronavirus evolution, the discovery of potential drug targets and development of therapeutic strategies are reviewed.