R
Ryan R. Murray
Researcher at Harvard University
Publications - 25
Citations - 7211
Ryan R. Murray is an academic researcher from Harvard University. The author has contributed to research in topics: Population & Gene. The author has an hindex of 17, co-authored 25 publications receiving 6498 citations. Previous affiliations of Ryan R. Murray include University of Helsinki.
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Journal ArticleDOI
High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
Haiyuan Yu,Pascal Braun,Muhammed A. Yildirim,Irma Lemmens,Kavitha Venkatesan,Julie M. Sahalie,Tomoko Hirozane-Kishikawa,Fana Gebreab,Nan Li,Nicolas Simonis,Tong Hao,Jean François Rual,Amélie Dricot,Alexei Vazquez,Ryan R. Murray,Christophe Simon,Leah Tardivo,Stanley Tam,Nenad Svrzikapa,Changyu Fan,Anne-Sophie De Smet,Adriana Motyl,Michael E. Hudson,Juyong Park,Juyong Park,Xiaofeng Xin,Michael E. Cusick,Troy Moore,Charles Boone,Michael Snyder,Frederick P. Roth,Albert-László Barabási,Albert-László Barabási,Jan Tavernier,David E. Hill,Marc Vidal +35 more
TL;DR: A comparative quality assessment of current yeast interactome data sets is carried out, demonstrating that high-throughput yeast two-hybrid (Y2H) screening provides high-quality binary interaction information.
Journal ArticleDOI
COT drives resistance to RAF inhibition through MAP kinase pathway reactivation
Cory M. Johannessen,Jesse S. Boehm,So Young Kim,Sapana R. Thomas,Sapana R. Thomas,Leslie Wardwell,Laura A. Johnson,Laura A. Johnson,Caroline Emery,Nicolas Stransky,Alexandria P. Cogdill,Jordi Barretina,Jordi Barretina,Giordano Caponigro,Haley Hieronymus,Haley Hieronymus,Haley Hieronymus,Ryan R. Murray,Kourosh Salehi-Ashtiani,David E. Hill,Marc Vidal,Jean J. Zhao,Xiaoping Yang,Ozan Alkan,Sungjoon Kim,Jennifer L. Harris,Christine D. Wilson,Vic E. Myer,Peter Finan,David E. Root,Thomas M. Roberts,Todd R. Golub,Todd R. Golub,Keith T. Flaherty,Reinhard Dummer,Barbara L. Weber,William R. Sellers,Robert Schlegel,Jennifer A. Wargo,William C. Hahn,William C. Hahn,Levi A. Garraway,Levi A. Garraway +42 more
TL;DR: Together, these results provide new insights into resistance mechanisms involving the MAPK pathway and articulate an integrative approach through which high-throughput functional screens may inform the development of novel therapeutic strategies.
Journal ArticleDOI
A proteome-scale map of the human interactome network
Thomas Rolland,Murat Tasan,Benoit Charloteaux,Samuel J. Pevzner,Quan Zhong,Quan Zhong,Nidhi Sahni,Song Yi,Irma Lemmens,Celia Fontanillo,Roberto Mosca,Atanas Kamburov,Susan Dina Ghiassian,Susan Dina Ghiassian,Xinping Yang,Lila Ghamsari,Dawit Balcha,Bridget E. Begg,Pascal Braun,Marc Brehme,Martin P. Broly,Anne-Ruxandra Carvunis,Dan Convery-Zupan,Roser Corominas,Jasmin Coulombe-Huntington,Jasmin Coulombe-Huntington,Elizabeth Dann,Matija Dreze,Amélie Dricot,Changyu Fan,Eric A. Franzosa,Eric A. Franzosa,Fana Gebreab,Bryan J. Gutierrez,Madeleine F. Hardy,Mike Jin,Shuli Kang,Ruth Kiros,Guan Ning Lin,Katja Luck,Andrew MacWilliams,Jörg Menche,Jörg Menche,Ryan R. Murray,Alexandre Palagi,Matthew M. Poulin,Xavier Rambout,Xavier Rambout,John Rasla,Patrick Reichert,Viviana Romero,Elien Ruyssinck,Julie M. Sahalie,Annemarie Scholz,Akash A. Shah,Amitabh Sharma,Amitabh Sharma,Yun Shen,Kerstin Spirohn,Stanley Tam,Alexander O. Tejeda,Shelly A. Trigg,Jean-Claude Twizere,Jean-Claude Twizere,Kerwin Vega,Jennifer M. Walsh,Michael E. Cusick,Yu Xia,Yu Xia,Albert-László Barabási,Albert-László Barabási,Albert-László Barabási,Lilia M. Iakoucheva,Patrick Aloy,Javier De Las Rivas,Jan Tavernier,Michael A. Calderwood,David E. Hill,Tong Hao,Frederick P. Roth,Marc Vidal +80 more
TL;DR: The map uncovers significant interconnectivity between known and candidate cancer gene products, providing unbiased evidence for an expanded functional cancer landscape, while demonstrating how high-quality interactome models will help "connect the dots" of the genomic revolution.
Journal ArticleDOI
An empirical framework for binary interactome mapping
Kavitha Venkatesan,Kavitha Venkatesan,Jean François Rual,Alexei Vazquez,Alexei Vazquez,Ulrich Stelzl,Irma Lemmens,Tomoko Hirozane-Kishikawa,Tong Hao,Martina Zenkner,Xiaofeng Xin,Kwang-Il Goh,Kwang-Il Goh,Kwang-Il Goh,Muhammed A. Yildirim,Nicolas Simonis,Kathrin Heinzmann,Fana Gebreab,Julie M. Sahalie,Sebiha Cevik,Sebiha Cevik,Christophe Simon,Anne Sophie de Smet,Elizabeth Dann,Alex Smolyar,Arunachalam Vinayagam,Haiyuan Yu,David Szeto,Heather Borick,Heather Borick,Amélie Dricot,Niels Klitgord,Niels Klitgord,Ryan R. Murray,Chenwei Lin,Maciej Lalowski,Jan Timm,Kirstin Rau,Charles Boone,Pascal Braun,Michael E. Cusick,Frederick P. Roth,David E. Hill,Jan Tavernier,Erich E. Wanker,Albert-László Barabási,Albert-László Barabási,Marc Vidal +47 more
TL;DR: The results indicate that high-throughput yeast two-hybrid interactions for human proteins are more precise than literature-curated interactions supported by a single publication, suggesting that HT-Y2H is suitable to map a significant portion of the human interactome.
Journal ArticleDOI
A public genome-scale lentiviral expression library of human ORFs
Xiaoping Yang,Jesse S. Boehm,Xinping Yang,Kourosh Salehi-Ashtiani,Tong Hao,Yun Shen,Rakela Lubonja,Sapana R. Thomas,Ozan Alkan,Tashfeen Bhimdi,Thomas M Green,Cory M. Johannessen,Cory M. Johannessen,Serena J. Silver,Cindy Nguyen,Ryan R. Murray,Haley Hieronymus,Haley Hieronymus,Haley Hieronymus,Dawit Balcha,Changyu Fan,Chenwei Lin,Lila Ghamsari,Marc Vidal,William C. Hahn,David E. Hill,David E. Root +26 more
TL;DR: This work describes the production of a sequence-confirmed, clonal collection of over 16,100 human open-reading frames encoded in a versatile Gateway vector system, thereby enabling both targeted experiments and high-throughput screens in diverse cell types.