S
Semyon Kruglyak
Researcher at Illumina
Publications - 18
Citations - 10571
Semyon Kruglyak is an academic researcher from Illumina. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 14, co-authored 16 publications receiving 9664 citations.
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Journal ArticleDOI
The International HapMap Project
John W. Belmont,Paul Hardenbol,Thomas D. Willis,Fuli Yu,Huanming Yang,Lan Yang Ch'Ang,Wei Huang,Bin Liu,Yan Shen,Paul K.H. Tam,Lap-Chee Tsui,Mary M.Y. Waye,Jeffrey Tze Fei Wong,Changqing Zeng,Qingrun Zhang,Mark S. Chee,Luana Galver,Semyon Kruglyak,Sarah S. Murray,Arnold Oliphant,Alexandre Montpetit,Fanny Chagnon,Vincent Ferretti,Martin Leboeuf,Michael S. Phillips,Andrei Verner,Shenghui Duan,Denise L. Lind,Raymond D. Miller,John P. Rice,Nancy L. Saccone,Patricia Taillon-Miller,Ming Xiao,Akihiro Sekine,Koki Sorimachi,Yoichi Tanaka,Tatsuhiko Tsunoda,Eiji Yoshino,David R. Bentley,Sarah E. Hunt,Don Powell,Houcan Zhang,Ichiro Matsuda,Yoshimitsu Fukushima,Darryl Macer,Eiko Suda,Charles N. Rotimi,Clement Adebamowo,Toyin Aniagwu,Patricia A. Marshall,Olayemi Matthew,Chibuzor Nkwodimmah,Charmaine D.M. Royal,Mark Leppert,Missy Dixon,Fiona Cunningham,Ardavan Kanani,Gudmundur A. Thorisson,Peter E. Chen,David J. Cutler,Carl S. Kashuk,Peter Donnelly,Jonathan Marchini,Gilean McVean,Simon Myers,Lon R. Cardon,Andrew P. Morris,Bruce S. Weir,James C. Mullikin,Michael Feolo,Mark J. Daly,Renzong Qiu,Alastair Kent,Georgia M. Dunston,Kazuto Kato,Norio Niikawa,Jessica Watkin,Richard A. Gibbs,Erica Sodergren,George M. Weinstock,Richard K. Wilson,Lucinda Fulton,Jane Rogers,Bruce W. Birren,Hua Han,Hongguang Wang,Martin Godbout,John C. Wallenburg,Paul L'Archevêque,Guy Bellemare,Kazuo Todani,Takashi Fujita,Satoshi Tanaka,Arthur L. Holden,Francis S. Collins,Lisa D. Brooks,Jean E. McEwen,Mark S. Guyer,Elke Jordan,Jane Peterson,Jack Spiegel,Lawrence M. Sung,Lynn F. Zacharia,Karen Kennedy,Michael Dunn,Richard Seabrook,Mark Shillito,Barbara Skene,John Stewart,David Valle,Ellen Wright Clayton,Lynn B. Jorde,Aravinda Chakravarti,Mildred K. Cho,Troy Duster,Troy Duster,Morris W. Foster,Maria Jasperse,Bartha Maria Knoppers,Pui-Yan Kwok,Julio Licinio,Jeffrey C. Long,Pilar N. Ossorio,Vivian Ota Wang,Charles N. Rotimi,Patricia Spallone,Patricia Spallone,Sharon F. Terry,Eric S. Lander,Eric H. Lai,Deborah A. Nickerson,Gonçalo R. Abecasis,David Altshuler,Michael Boehnke,Panos Deloukas,Julie A. Douglas,Stacey Gabriel,Richard R. Hudson,Thomas J. Hudson,Leonid Kruglyak,Yusuke Nakamura,Robert L. Nussbaum,Stephen F. Schaffner,Stephen T. Sherry,Lincoln Stein,Toshihiro Tanaka +145 more
TL;DR: The HapMap will allow the discovery of sequence variants that affect common disease, will facilitate development of diagnostic tools, and will enhance the ability to choose targets for therapeutic intervention.
Journal ArticleDOI
Exploring Expression Data: Identification and Analysis of Coexpressed Genes
TL;DR: A similarity measure that reduces the number of false positives, a new clustering algorithm designed specifically for grouping gene expression patterns, and an interactive graphical cluster analysis tool that allows user feedback and validation are described.
Journal ArticleDOI
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
Xiaoyu Chen,Ole Schulz-Trieglaff,Richard Shaw,Bret Barnes,Felix Schlesinger,Morten Källberg,Anthony J. Cox,Semyon Kruglyak,Christopher T. Saunders +8 more
TL;DR: Manta is optimized for rapid germline and somatic analysis, calling structural variants, medium-sized indels and large insertions on standard compute hardware in less than a tenth of the time that comparable methods require to identify only subsets of these variant types.
Journal ArticleDOI
Highly parallel SNP genotyping.
Jian-Bing Fan,Arnold Oliphant,Richard Shen,Bahram Ghaffarzadeh Kermani,Francisco Garcia,Kevin L. Gunderson,Mark Hansen,Frank J. Steemers,S L Butler,Panagiotis Deloukas,Luana Galver,Sarah E. Hunt,Celeste McBride,Marina Bibikova,Todd Rubano,J Chen,Eliza Wickham,Dennis Doucet,W Chang,D Campbell,Baohong Zhang,Semyon Kruglyak,David Bentley,Jennifer S. Haas,Philippe Rigault,L Zhou,J Stuelpnagel,M S Chee +27 more
TL;DR: An integrated SNP genotyping system that combines a highly multiplexed assay with an accurate readout technology based on random arrays of DNA-coated beads is developed that helps enable genome-wide association studies and other large-scale genetic analysis projects.
Journal ArticleDOI
Decoding Randomly Ordered DNA Arrays
Kevin L. Gunderson,Semyon Kruglyak,Michael S. Graige,Francisco Garcia,Bahram Ghaffarzadeh Kermani,Chanfeng Zhao,Diping Che,Todd A. Dickinson,Eliza Wickham,Jim Bierle,Dennis Doucet,Monika Milewski,Robert Yang,Chris Siegmund,Juergen Haas,Lixin Zhou,Arnold Oliphant,Jian-Bing Fan,Steven M. Barnard,Mark S. Chee +19 more
TL;DR: A simple and efficient algorithm to identify each member of a large collection of DNA-linked objects through the use of hybridization is developed, and it is applied to the manufacture of randomly assembled arrays of beads in wells.