A
Antoine Danchin
Researcher at University of Hong Kong
Publications - 495
Citations - 32036
Antoine Danchin is an academic researcher from University of Hong Kong. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 80, co-authored 483 publications receiving 30219 citations. Previous affiliations of Antoine Danchin include Collège de France & Louisiana State University.
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Journal ArticleDOI
The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
F. Kunst,Naotake Ogasawara,Ivan Moszer,Alessandra M. Albertini,G. Alloni,Vasco Azevedo,M. G. Bertero,M. G. Bertero,Philippe Bessières,Bolotin Ap,S. Borchert,Rainer Borriss,L. Boursier,Alain Brans,M. Braun,S. C. Brignell,Sierd Bron,S. Brouillet,S. Brouillet,Carlo V. Bruschi,B. Caldwell,V. Capuano,Noel Carter,Soo Keun Choi,J.-J. Codani,Ian F. Connerton,Nicola J. Cummings,Richard A. Daniel,François Denizot,Kevin M. Devine,A. Düsterhöft,Stanislav Dusko Ehrlich,P. T. Emmerson,K. D. Entian,Jeff Errington,C. Fabret,Eugenio Ferrari,D. Foulger,C. Fritz,Masaya Fujita,Yasutaro Fujita,S. Fuma,Alessandro Galizzi,Nathalie Galleron,Sa Youl Ghim,Philippe Glaser,André Goffeau,E. J. Golightly,Guido Grandi,G. Guiseppi,BJ Guy,Kazuko Haga,Jacques Haiech,Colin R. Harwood,Alain Hénaut,H. Hilbert,Siger Holsappel,S. Hosono,Marie-Françoise Hullo,Mitsuhiro Itaya,Louis M. Jones,Bernard Joris,Dimitri Karamata,Y. Kasahara,M. Klaerr-Blanchard,Carsten Klein,Y. Kobayashi,P. Koetter,G. Koningstein,Susanne Krogh,Miyuki Kumano,Kanako Kurita,Alla Lapidus,S. Lardinois,J. Lauber,Vladimir Lazarevic,Simon Ming-Yuen Lee,Alain Levine,H. Liu,S. Masuda,Catherine Mauël,Claudine Médigue,Claudine Médigue,N. Medina,Rafael P. Mellado,Motoki Mizuno,D. Moestl,S. Nakai,Michiel A. Noback,David Noone,Mary O'Reilly,K. Ogawa,A. Ogiwara,B. Oudega,S.-H. Park,Victor Parro,Thomas Pohl,Daniel Portetelle,Steffen Porwollik,A. M. Prescott,E. Presecan,Petar Pujic,Bénédicte Purnelle,Georges Rapoport,M. Rey,Stacey Reynolds,Michael A. Rieger,Carlo Rivolta,Eduardo P. C. Rocha,Eduardo P. C. Rocha,B. Roche,Matthias Rose,Yoshito Sadaie,Toshitada Sato,E. Scanlan,S. Schleich,R. Schroeter,F Scoffone,Junichi Sekiguchi,Agnieszka Sekowska,Simone J. Séror,Pascale Serror,B.-S. Shin,Blazenka Soldo,Alexei Sorokin,E. Tacconi,T. Takagi,Hideyuki Takahashi,Ken-Ichi Takemaru,Michio Takeuchi,A. Tamakoshi,Tetsu Tanaka,Peter Terpstra,Angelo Tognoni,Valentina Tosato,Shigeki Uchiyama,Micheline Vandenbol,Françoise Vannier,A. Vassarotti,Alain Viari,R. Wambutt,E. Wedler,H. Wedler,T. Weitzenegger,P. Winters,Anil Wipat,Hiroki Yamamoto,Kunio Yamane,K. Yasumoto,Katsunori Yata,K. Yoshida,Hisashi Yoshikawa,Emmanuelle Zumstein,Hiroshi Yoshikawa,Antoine Danchin +154 more
TL;DR: Bacillus subtilis is the best-characterized member of the Gram-positive bacteria, indicating that bacteriophage infection has played an important evolutionary role in horizontal gene transfer, in particular in the propagation of bacterial pathogenesis.
Journal ArticleDOI
Essential Bacillus subtilis genes
Kazuto Kobayashi,Stanislav Dusko Ehrlich,Alessandra M. Albertini,G. Amati,Kasper Krogh Andersen,Maryvonne Arnaud,Kei Asai,S. Ashikaga,Stéphane Aymerich,Philippe Bessières,F. Boland,S.C. Brignell,Sierd Bron,Keigo Bunai,J. Chapuis,L.C. Christiansen,Antoine Danchin,Michel Débarbouillé,Etienne Dervyn,E. Deuerling,Kevin M. Devine,Susanne Krogh Devine,Oliver Dreesen,Jeffery Errington,Sabine Fillinger,Simon J. Foster,Yasutaro Fujita,Alessandro Galizzi,Rozenn Gardan,Caroline Eschevins,Tatsuya Fukushima,Kazuko Haga,Colin R. Harwood,Michael Hecker,D. Hosoya,Marie-Françoise Hullo,Hiroshi Kakeshita,Dimitri Karamata,Yasuhiro Kasahara,Fujio Kawamura,K. Koga,P. Koski,Ritsuko Kuwana,Daisuke Imamura,M. Ishimaru,Shu Ishikawa,I. Ishio,D. Le Coq,Anne Masson,Catherine Mauël,Rob Meima,Rafael P. Mellado,Anne Moir,Shigeki Moriya,E. Nagakawa,Hideaki Nanamiya,S. Nakai,Per Nygaard,Mitsuo Ogura,T. Ohanan,Mary O'Reilly,M. O'Rourke,Zoltán Prágai,H.M. Pooley,Georges Rapoport,J.P. Rawlins,L.A. Rivas,Carlo Rivolta,A. Sadaie,Yoshito Sadaie,Matti Sarvas,T. Sato,Hans Henrik Saxild,E. Scanlan,Wolfgang Schumann,J.F.M.L. Seegers,Junichi Sekiguchi,Agnieszka Sekowska,Simone J. Séror,M. Simon,P. Stragier,R. Studer,Hiromu Takamatsu,Teruo Tanaka,M. Takeuchi,H.B. Thomaides,Valerie Vagner,J.M. van Dijl,Kazuhito Watabe,Anil Wipat,Hiroki Yamamoto,M. Yamamoto,Y. Yamamoto,Kunio Yamane,Katsunori Yata,K. Yoshida,Hisashi Yoshikawa,Ulrich Zuber,Naotake Ogasawara +98 more
TL;DR: To estimate the minimal gene set required to sustain bacterial life in nutritious conditions, a systematic inactivation of Bacillus subtilis genes was carried out and most genes involved in the Embden–Meyerhof–Parnas pathway are essential.
Journal ArticleDOI
Selective stabilisation of developing synapses as a mechanism for the specification of neuronal networks.
TL;DR: The alternative proposed in this article is that connections are genetically specified between classes of cells, but the final wiring pattern depends on the refinement of those collections by selective stabilisation during neuronal activity.
Journal ArticleDOI
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
Marie Touchon,Marie Touchon,Claire Hoede,Olivier Tenaillon,Valérie Barbe,Simon Baeriswyl,Philippe Bidet,Edouard Bingen,Stéphane Bonacorsi,Christiane Bouchier,Odile Bouvet,Alexandra Calteau,Hélène Chiapello,Olivier Clermont,Stéphane Cruveiller,Antoine Danchin,Médéric Diard,Carole Dossat,Meriem El Karoui,Eric Frapy,Louis Garry,Jean Marc Ghigo,Anne-Marie Gilles,James R. Johnson,James R. Johnson,Chantal Le Bouguénec,Mathilde Lescat,Sophie Mangenot,Vanessa Martinez-Jéhanne,Ivan Matic,Xavier Nassif,Sophie Oztas,Marie-Agnès Petit,Christophe Pichon,Zoé Rouy,Claude Saint Ruf,Dominique Schneider,Jérôme Tourret,Benoit Vacherie,David Vallenet,Claudine Médigue,Eduardo P. C. Rocha,Eduardo P. C. Rocha,Erick Denamur +43 more
TL;DR: An important adaptive role for metabolism diversification within group B2 and Shigella strains is found, but few or no extraint intestinal virulence-specific genes are identified, which could render difficult the development of a vaccine against extraintestinal infections.
Journal ArticleDOI
Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human
Huai-Dong Song,Chang-Chun Tu,Guo-Wei Zhang,Shengyue Wang,Kui Zheng,Lian-Cheng Lei,Qiu-Xia Chen,Yu-Wei Gao,Hui-Qiong Zhou,Hua Xiang,Hua-Jun Zheng,Shur-Wern Wang Chern,Feng Cheng,Chun-Ming Pan,Hua Xuan,Sai-Juan Chen,Hui-Ming Luo,Duan-Hua Zhou,Yu-Fei Liu,Jian-Feng He,Peng-Zhe Qin,Ling-Hui Li,Yu-Qi Ren,Wen-Jia Liang,Ye-Dong Yu,Larry J. Anderson,Ming Wang,Rui-Heng Xu,Xin-Wei Wu,Huan-Ying Zheng,Jin-Ding Chen,Guodong Liang,Yang Gao,Ming Liao,Ling Fang,Li-Yun Jiang,Hui Li,Fang Chen,Biao Di,Li-Juan He,Jin-Yan Lin,Suxiang Tong,Xiangang Kong,Lin Du,Pei Hao,Hua Tang,Andrea Bernini,Xiao-Jing Yu,Ottavia Spiga,Zong-Ming Guo,Hai-Yan Pan,Wei-Zhong He,Jean-Claude Manuguerra,Arnaud Fontanet,Antoine Danchin,Neri Niccolai,Yixue Li,Chung-I Wu,Guoping Zhao +58 more
TL;DR: The ratio of nonsynonymous/synonymous nucleotide substitution in palm civets collected 1 yr apart from different geographic locations is very high, suggesting a rapid evolving process of viral proteins in civet as well, much like their adaptation in the human host in the early 2002-2003 epidemic.