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Open AccessJournal ArticleDOI

1,3-Thiazolbenzamide Derivatives as Chikungunya Virus nsP2 Protease Inhibitors.

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TLDR
In this paper, two compounds 10 and 10c, identified by molecular docking, showed antiviral activity against CHIKV with IC50 of 13.1 and 8.3 μM, respectively.
Abstract
Chikungunya fever results from an infection with Chikungunya virus (CHIKV, genus Alphavirus) that is prevalent in tropical regions and is spreading fast to temperate climates with documented outbreaks in Europe and the Americas. Currently, there are no available vaccines or antiviral drugs for prevention or treatment of Chikungunya fever. The nonstructural proteins (nsPs) of CHIKV responsible for virus replication are promising targets for the development of new antivirals. This study was attempted to find out new potential inhibitors of CHIKV nsP2 protease using the ligand-based drug design. Two compounds 10 and 10c, identified by molecular docking, showed antiviral activity against CHIKV with IC50 of 13.1 and 8.3 μM, respectively. Both compounds demonstrated the ability to inhibit the activity of nsP2 in a cell-free assay, and the impact of compound 10 on virus replication was confirmed by western blot. The molecular dynamics study of the interactions of compounds 10 and 10c with CHIKV nsP2 showed that a possible mechanism of action of these compounds is the blocking of the active site and the catalytic dyad of nsP2.

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Journal ArticleDOI

Anti-viral activity of thiazole derivatives: an updated patent review

TL;DR: This review covered reports in the patent literature in the period 2014 to the first quarter of 2021 on the antiviral activities of thiazole derivatives reported to inhibit a wide range of viruses including influenza viruses, coronaviruses, herpes viruses, hepatitis B and C, bovine viral diarrhea virus, chikungunya virus and human immunodeficiency viruses.
Journal ArticleDOI

In Silico Studies Revealed Interaction Mechanisms of Benzylidene-acrylohydrazide Derivates and nsP2 CHIKV

TL;DR: The chikungunya virus (CHIKV, Togaviridae family, Alphavirus genus) represents an emerging public health problem worldwide because it causes high morbidity and mortality rates.
Journal ArticleDOI

A review on structural genomics approach applied for drug discovery against three vector-borne viral diseases: Dengue, Chikungunya and Zika

TL;DR: The applications of the structural genomics approach towards the discovery of potential lead-like molecules against the genomic drug targets of three vector-borne diseases, namely, Dengue, Chikungunya and Zika are discussed.
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Discovery and optimization of natural-based nanomolar c-Kit inhibitors via in silico and in vitro studies.

TL;DR: Sarma et al. as discussed by the authors proposed a virtual screening of a library of natural-based compounds, which yielded three hits (2, 5 and 6) which possessed nanomolar inhibitory (2.02, 4.33 and 2.80) activity when tested in vitro against c-Kit.
References
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Journal ArticleDOI

AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

TL;DR: AutoDock Vina achieves an approximately two orders of magnitude speed‐up compared with the molecular docking software previously developed in the lab, while also significantly improving the accuracy of the binding mode predictions, judging by tests on the training set used in AutoDock 4 development.
Journal ArticleDOI

Nosé-Hoover chains : the canonical ensemble via continuous dynamics

TL;DR: In this paper, a modification of the Nose-Hoover dynamics is proposed which includes not a single thermostat variable but a chain of variables, Nose chains, which gives the canonical distribution where the simple formalism fails.
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Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments

TL;DR: It is shown that database enrichment is improved with proper preparation and that neglecting certain steps of the preparation process produces a systematic degradation in enrichments, which can be large for some targets.
Proceedings ArticleDOI

Scalable algorithms for molecular dynamics simulations on commodity clusters

TL;DR: This work presents several new algorithms and implementation techniques that significantly accelerate parallel MD simulations compared with current state-of-the-art codes, including a novel parallel decomposition method and message-passing techniques that reduce communication requirements, as well as novel communication primitives that further reduce communication time.
Journal ArticleDOI

Integrated Modeling Program, Applied Chemical Theory (IMPACT).

TL;DR: An overview of the IMPACT molecular mechanics program is provided with an emphasis on recent developments and a description of its current functionality and a status report for the fixed charge and polarizable force fields is included.
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What are the molecular mechanisms underlying the antiviral effects of Imidazonaphthyridine on Chikungunya virus?

The provided paper does not mention the antiviral effects of Imidazonaphthyridine on Chikungunya virus.