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Open AccessJournal ArticleDOI

A Comparison of Computational Models for the Extracellular Potential of Neurons

TLDR
There is no one model for all applications of the extracellular space, as they show significantly different responses - especially close to neuronal membranes, and three models with distinct assumptions and levels of detail are compared.
Abstract
The extracellular space has an ambiguous role in neuroscience. It is present in every physiologically relevant system and often used as a measurement site in experimental recordings, but it has received subordinate attention compared to the intracellular domain. In computational modeling, it is often regarded as a passive, homogeneous resistive medium with a constant conductivity, which greatly simplifies the computation of extracellular potentials. However, recent studies have shown that local ionic diffusion and capacitive effects of electrically active membranes can have a substantial impact on the extracellular potential. These effects can not be described by traditional models, and they have been subject to theoretical and experimental analyses. We strive to give an overview over recent progress in modeling the extracellular space with special regard towards the concentration and potential dynamics on different temporal and spatial scales. Three models with distinct assumptions and levels of detail are compared both theoretically and by means of numerical simulations: the classical volume conductor (VC) model, which is most frequently used in form of the line source approximation (LSA); the very detailed, but computationally intensive Poisson-Nernst-Planck model of electrodiffusion (PNP); and an intermediate one called the electroneutral model (EN). The results clearly show that there is no one model for all applications, as they show significantly different responses especially close to neuronal membranes. Finally, we list some common use cases for model simulations and give recommendations on which model to use in each situation.

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Citations
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Journal ArticleDOI

Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue

TL;DR: A hybrid simulation framework is presented that accounts for diffusive effects on the ECS potential and explores the effect that ECS diffusion has on the electrical potential surrounding a small population of 10 pyramidal neurons.
Journal ArticleDOI

A phenomenological computational model of the evoked action potential fitted to human cochlear implant responses

TL;DR: A phenomenological computational model is presented that is customized with the patient’s data provided by the electrically evoked compound action potential (ECAP) for simulating the neural response to electrical stimulus produced by the electrodes of cochlear implants (CIs).
Posted ContentDOI

Nano-scale solution of the Poisson-Nernst-Planck (PNP) equations in a fraction of two neighboring cells reveals the magnitude of intercellular electrochemical waves

TL;DR: This work reports solutions of the PNP equations in a fraction of two abuttal cells separated by a tiny extracellular space and shows that when only the potassium channels of the two cells are open, a stationary solution is reached with the well-known Debye layer close to the membranes.
References
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Journal ArticleDOI

A quantitative description of membrane current and its application to conduction and excitation in nerve

TL;DR: This article concludes a series of papers concerned with the flow of electric current through the surface membrane of a giant nerve fibre by putting them into mathematical form and showing that they will account for conduction and excitation in quantitative terms.
Journal ArticleDOI

The NEURON simulation environment

TL;DR: This work presents the basic ideas that would help informed users make the most efficient use of NEURON, the powerful and flexible environment for implementing models of individual neurons and small networks of neurons.
Journal ArticleDOI

Serial block−face scanning electron microscopy to reconstruct three−dimensional tissue nanostructure

TL;DR: It is demonstrated that datasets meeting these requirements can be obtained by automated block-face imaging combined with serial sectioning inside the chamber of a scanning electron microscope, opening the possibility of automatically obtaining the electron-microscope-level 3D datasets needed to completely reconstruct the connectivity of neuronal circuits.
Journal ArticleDOI

Diffusion in brain extracellular space.

TL;DR: Experimental studies with the real-time iontophoresis method employing the cation tetramethylammonium in normal brain tissue improve the conception of ECS structure and the roles of glia and extracellular matrix in modulating the ECS microenvironment.
Book

The Book of GENESIS: Exploring Realistic Neural Models with the GEneral NEural SImulation System

TL;DR: This publication explains how to use the GENESIS simulation/modeling software system available through the Internet file-server at the California Institute of Technology, Pasadena, California, USA.
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