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Open AccessJournal ArticleDOI

Bacterial Communities within Digestive Tracts of Ground Beetles (Coleoptera: Carabidae)

TLDR
The identification of bacteria uniquely and consistently associated with these ground beetles provides the basis for further investigation of species-specific functional roles.
Abstract
We identified the bacterial communities within the alimentary tracts of two granivorous ground beetles as a first step in the exploration of bacteria–ground beetle symbioses. Terminal-restriction fragment length polymorphism analyses of bacterial rRNA extracted from the guts of field-collected individuals of Harpalus pensylvanicus (DeGeer) and Anisodactylus sanctaecrucis (F.) (Coleoptera: Carabidae) revealed that gut-associated bacterial communities were of low diversity. Individuals from the same beetle species possessed similar bacterial community profiles, but the two species exhibited unique profiles. Bacterial 16S rRNA clone libraries constructed for the two beetle species showed that H. pensylvanicus had a more diverse community (six operational taxonomic units [OTUs]) compared with A. sanctaecrucis (three OTUs). Only one OTU, closely related to Hafnia alvei, was common between the two beetle species. Cloned partial 16S rRNA sequences for each OTU were most closely matched to the following ...

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Do diet and taxonomy influence insect gut bacterial communities

TL;DR: Evidence is found to support the hypotheses that host diet and taxonomy structure insect gut bacterial communities (P < 0.001) were important in hymenopteran and termite gut community structure, and diet was an important community structuring factor particularly for insect hosts that ingest lignocellulose‐derived substances.
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Spiroplasma bacteria enhance survival of Drosophila hydei attacked by the parasitic wasp Leptopilina heterotoma.

TL;DR: The results suggest that Spiroplasma confers protection to D. hydei against wasp parasitism, to the authors' knowledge the first report of a potential defensive mutualism in the genus Spiro Plasma.
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Unearthing carrion beetles' microbiome: characterization of bacterial and fungal hindgut communities across the Silphidae

TL;DR: Despite the possibility for vertical transmission via anal secretions, the distinct hindgut microbiota of the Silphidae appears to be shaped by frequent horizontal exchange or environmental uptake of symbionts, and both the fungal symbiont phylogeny and distance‐based bacterial community clustering showed higher congruence with sampling locality than host phylogeny.
References
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Journal ArticleDOI

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

TL;DR: A new criterion for triggering the extension of word hits, combined with a new heuristic for generating gapped alignments, yields a gapped BLAST program that runs at approximately three times the speed of the original.
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Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses

TL;DR: A protocol is described for rapidly generating large blocks of 16S rRNA sequence data without isolation of the 16 S rRNA or cloning of its gene, and its phylogenetic usefulness is evaluated by examination of several 17S rRNAs whose gene sequences are known.
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Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology.

TL;DR: Fluorescent-dye-conjugated oligonucleotides were used to classify 14 Fibrobacter strains by fluorescence microscopy and the direct detection of F. intestinalis in mouse cecum samples demonstrated the application of this technique to the characterization of complex natural samples.
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Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

TL;DR: Bellerophon was specifically developed to detect 16S rRNA gene chimeras in PCR-clone libraries of environmental samples but can be applied to other nucleotide sequence alignments.
Journal ArticleDOI

Nutritional Interactions in Insect-Microbial Symbioses: Aphids and Their Symbiotic Bacteria Buchnera

TL;DR: It is argued that strong parallels may exist between the nutritional interactions (including the underlying mechanisms) in the aphid-Buchnera association and other insect symbioses with intracellular microorganisms.
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