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Critical review on biofilm methods

TLDR
This review aims at helping scientists in finding the most appropriate and up-to-date methods to study their biofilms by giving a critical perspective, highlighting the advantages and limitations of several methods.
Abstract
Biofilms are widespread in nature and constitute an important strategy implemented by microorganisms to survive in sometimes harsh environmental conditions. They can be beneficial or have a negative impact particularly when formed in industrial settings or on medical devices. As such, research into the formation and elimination of biofilms is important for many disciplines. Several new methodologies have been recently developed for, or adapted to, biofilm studies that have contributed to deeper knowledge on biofilm physiology, structure and composition. In this review, traditional and cutting-edge methods to study biofilm biomass, viability, structure, composition and physiology are addressed. Moreover, as there is a lack of consensus among the diversity of techniques used to grow and study biofilms. This review intends to remedy this, by giving a critical perspective, highlighting the advantages and limitations of several methods. Accordingly, this review aims at helping scientists in finding the most appropriate and up-to-date methods to study their biofilms.

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Citations
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Quantification of biofilm in microtiter plates: overview oftesting conditions and practical recommendations for assessmentof biofilm production by staphylococci.

TL;DR: The details of all steps involved in the quantification of biofilm formation in microtiter plates are described in this paper, where the authors present a protocol incorporating information on assessment of Biofilm production by staphylococci, gained both by direct experience as well as by analysis of methods for assayingBiofilm production.
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Nanomaterials with a photothermal effect for antibacterial activities: an overview

TL;DR: Four functional categories of antibacterial nanomaterials with a photothermal conversion effect are classified: carbon-based nanoconjugates of graphene derivatives or carbon nanotubes, noble metal nanom material mainly from gold and silver, metallic compound nanocomposites, and polymeric as well as other nanostructures.
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Biofilm-related disease.

TL;DR: ABSTRACT Biofilm formation represents a protected mode of growth that renders bacterial cells less susceptible to antimicrobials and to killing by host immune effector mechanisms and s...
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A review of methods for the detection of pathogenic microorganisms

TL;DR: This review presents an opportunity to fill a knowledge gap for an extremely important research area; discussing the main techniques, biology, chemistry, miniaturisation, sensing and the emerging state-of-the-art research and developments for detection of pathogens in food, water, blood and faecal samples.
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Marine Plastic Debris: A New Surface for Microbial Colonization.

TL;DR: It is concluded that research so far has not shown Plastisphere communities to starkly differ from microbial communities on other inert surfaces, which is particularly true for mature biofilm assemblages.
References
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Journal ArticleDOI

NIH Image to ImageJ: 25 years of image analysis

TL;DR: The origins, challenges and solutions of NIH Image and ImageJ software are discussed, and how their history can serve to advise and inform other software projects.
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Bacterial biofilms : A common cause of persistent infections

TL;DR: Improvements in understanding of the genetic and molecular basis of bacterial community behavior point to therapeutic targets that may provide a means for the control of biofilm infections.
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The biofilm matrix

TL;DR: The functions, properties and constituents of the EPS matrix that make biofilms the most successful forms of life on earth are described.
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Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide

TL;DR: The results show that the backbone of DNA can be replaced by a polyamide, with the resulting oligomer retaining base-specific hybridization.
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