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Journal ArticleDOI

Distribution of microbial- and root-derived phosphatase activities in the rhizosphere depending on P availability and C allocation – Coupling soil zymography with 14C imaging

Marie Spohn, +1 more
- 01 Dec 2013 - 
- Vol. 67, pp 106-113
TLDR
Soil zymography with fluorescent substrates is a very promising approach for studying the distribution of a broad range of extracellular enzymes at microscales and indicates a spatial differentiation of organic P mineralization by various ecophysiological groups that react differently to inorganic P fertilization.
Abstract
Despite its importance for terrestrial nutrient and carbon cycling, the spatial organization of microbial activity in soil and in the rhizosphere is poorly understood. We related carbon allocation by roots to distribution of acid and alkaline phosphatase activity in the rhizosphere of Lupinus albus L. To do so, we further developed soil zymography – an in situ method for the analysis of the two-dimensional distribution of enzyme activity in soil – integrating fluorescent substrates. Soil zymography was combined with 14C imaging, a technique that gives insights into the distribution of photosynthates after labeling plants with 14C. Both acid and alkaline phosphatase activity were up to 5.4-times larger in the rhizosphere than in the bulk soil. While acid phosphatase activity (produced by roots and microorganisms) was closely associated with roots, alkaline phosphatase activity (produced only by microorganisms) was more widely distributed, leading to a 2.5-times larger area of activity of alkaline than of acid phosphatase. These results indicate a spatial differentiation of different ecophysiological groups of organic P mineralizing organisms. The spatial differentiation could be either between microorganisms and L. albus or between microorganisms that produce exclusively alkaline phosphatases on the one hand, and L. albus and root associated microorganisms that produce acid phosphatases on the other hand. The spatial separation of different organic P mineralizing organisms might alleviate a potential competition between them. While alkaline phosphatase activity strongly decreased with P fertilization, acid phosphatase activity was not affected by fertilization, suggesting that alkaline phosphatase-producing microorganisms react more strongly to it than other organic P mineralizing organisms. Alkaline phosphatase activity was high in parts of the rhizosphere where relatively little recent photosynthates were allocated, indicating that rhizodeposition and the activity of alkaline phosphatase-producing microorganisms are not directly related. Our study indicates, first, a spatial differentiation of organic P mineralization by various ecophysiological groups that react differently to inorganic P fertilization and second, that rhizodeposition and alkaline phosphatase-producing microorganisms were not directly related. Finally, we conclude that soil zymography with fluorescent substrates is a very promising approach for studying the distribution of a broad range of extracellular enzymes at microscales.

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Citations
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Journal ArticleDOI

Microbial hotspots and hot moments in soil: Concept & review

TL;DR: It is suggested that, irrespective of their volume, the hotspots are mainly responsible for the ecologically relevant processes in soil, including succession in microbial communities and intense intra- and interspecific competition affecting C use efficiency, microbial growth and turnover.
Journal ArticleDOI

Sugars in soil and sweets for microorganisms: Review of origin, content, composition and fate

Abstract: Sugars are the most abundant organic compounds in the biosphere because they are monomers of all polysaccharides. We summarize the results of the last 40 years on the sources, content, composition and fate of sugars in soil and discuss their main functions. We especially focus on sugar uptake, utilization and recycling by microorganisms as this is by far the dominating process of sugar transformation in soil compared to sorption, leaching or plant uptake. Moreover, sugars are the most important carbon (C) and energy source for soil microorganisms. Two databases have been created. The 1st database focused on the contents of cellulose, non-cellulose, hot-water and cold-water extractable sugars in soils (348 data, 32 studies). This enabled determining the primary (plant-derived) and secondary (microbially and soil organic matter (SOM) derived) sources of carbohydrates in soil based on the galactose + mannose/arabinose + xylose (GM/AX) ratio. The 2nd database focused on the fate of sugar C in soils (734 data pairs, 32 studies using 13 C or 14 C labeled sugars). 13 C and 14 C dynamics enabled calculating the: 1) initial rate of sugar mineralization, 2) mean residence time (MRT) of C of the applied sugars, and 3) MRT of sugar C incorporated into 3a) microbial biomass and 3b) SOM. The content of hexoses was 3–4 times higher than pentoses, because hexoses originate from plants and microorganisms. The GM/AX ratio of non-cellulose sugars revealed a lower contribution of hexoses in cropland and grassland (ratio 0.7–1) compare to forest (ratio 1.5) soils. 13 C and 14 C studies showed very high initial rate of glucose mineralization (1.1% min −1 ) and much higher rate of sugars uptake by microorganisms from the soil solution. Considering this rate along with the glucose input from plants and its content in soil solution, we estimate that only about 20% of all sugars in soil originate from the primary source – decomposition of plant litter and rhizodeposits. The remaining 80% originates from the secondary source – microorganisms and their residues. The estimated MRT of sugar C in microbial biomass was about 230 days, showing intense and efficient internal recycling within microorganisms. The assessed MRT of sugar C in SOM was about 360 days, reflecting the considerable accumulation of sugar C in microbial residues and its comparatively slow external recycling. The very rapid uptake of sugars by microorganisms and intensive recycling clearly demonstrate the importance of sugars for microbes in soil. We speculate that the most important functions of sugars in soil are to maintain and stimulate microbial activities in the rhizosphere and detritusphere leading to mobilization of nutrients by accelerated SOM decomposition – priming effects. We conclude that the actual contribution of sugar C (not only whole sugar molecules, which are usually determined) to SOM is much higher than the 10 ± 5% commonly measured based on their content.
Journal ArticleDOI

Rhizosphere size and shape: Temporal dynamics and spatial stationarity

TL;DR: In this article, a literature analysis allows the conclusion that the rhizosphere extent for most of the parameters assessed by non-destructive visualization techniques is 0.5-4 cm, but exceeds 4 cm for gases, nitrate, water and redox potential.
Journal ArticleDOI

Sampling root exudates – Mission impossible?

TL;DR: A review of root exudation sampling methods can be found in this article, where the authors provide an overview of the main analytical approaches to analyze exudates, ranging from liquid sample analysis to isotope tracking and imaging techniques, as well as critical methodological aspects that need to be considered in the choice of experimental approach.
References
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Journal ArticleDOI

Nitrogen mineralization: challenges of a changing paradigm

TL;DR: A complete new conceptual model of the soil N cycle needs to incorporate recent research on plant–microbe competition and microsite processes to explain the dynamics of N across the wide range of N availability found in terrestrial ecosystems.
Journal ArticleDOI

Bioavailability of soil inorganic P in the rhizosphere as affected by root-induced chemical changes: A review

TL;DR: In this paper, the authors give an overview of those chemical processes that are directly induced by plant roots and which can affect the concentration of P in the soil solution and, ultimately, the bioavailability of soil inorganic P to plants.
Journal ArticleDOI

The fate of phosphorus during pedogenesis

TL;DR: The fate of phosphorus during pedogenesis is considered with particular emphasis on vertical distribution within the profile Information is based on P fractionation studies involving a range of soil sequences in New Zealand forms of P in soil parent materials are discussed in relation to soil P transformations as discussed by the authors.
Journal ArticleDOI

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

TL;DR: Features of the rhizosphere that are important for nutrient acquisition from soil are reviewed, with specific emphasis on the characteristics of roots that influence the availability and uptake of phosphorus and nitrogen.
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