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Journal ArticleDOI

Effects of Arsenic on Gut Microbiota and Its Biotransformation Genes in Earthworm Metaphire sieboldi.

TLDR
The results reveal that the earthworm gut can be a reservoir of microbes with the capability of reducing As(V) and extruding As(III) but with little methylation of arsenic.
Abstract
Arsenic biotransformation mediated by gut microbiota can affect arsenic bioavailability and microbial community. Arsenic species, arsenic biotransformation genes (ABGs), and the composition of gut microbial community were characterized after the earthworm Metaphire sieboldi was cultured in soils spiked with different arsenic concentrations. Arsenite (As(III)) was the major component in the earthworm gut, whereas arsenate (As(V)) was predominant in the soil. A total of 16 ABGs were quantified by high-throughput quantitative polymerase chain reaction (HT-qPCR). Genes involved in arsenic redox and efflux were predominant in all samples, and the abundance of ABGs involved in arsenic methylation and demethylation in the gut was very low. These results reveal that the earthworm gut can be a reservoir of microbes with the capability of reducing As(V) and extruding As(III) but with little methylation of arsenic. Moreover, gut microbial communities were dominated by Actinobacteria, Firmicutes, and Proteobacteria at the phylum level and were considerably different from those in the surrounding soil. Our work demonstrates that exposure to As(V) disturbs the gut microbiota of earthworms and provides some insights into arsenic biotransformation in the earthworm gut.

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Citations
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Journal ArticleDOI

Exposure to microplastics lowers arsenic accumulation and alters gut bacterial communities of earthworm Metaphire californica

TL;DR: Microplastics prevented the reduction of As(V) and accumulation of total arsenic in the gut which resulted in a lower toxicity on the earthworm, which broadens the understanding of the ecotoxicity of microplastics with other pollutants on the soil animals and on their gut microbiota.
Journal ArticleDOI

Ecological role of earthworm intestinal bacteria in terrestrial environments: A review.

TL;DR: A global dataset concerning worm gut bacteria will be needed to provide comprehensive information about intestinal bacteria pool, and act as a communication platform to further encourage the progress of worm gut research, according to the future prospect of worm's intestinal bacteria research.
Journal ArticleDOI

Recent advances in exploring the heavy metal(loid) resistant microbiome.

TL;DR: In this article, the authors provide an overview of the core metal resistant microbiome, development of metal resistance strategies, and potential factors driving the diversity and distribution of metal resistant determinants in natural environments.
Journal ArticleDOI

Arsenic and Sulfamethoxazole Increase the Incidence of Antibiotic Resistance Genes in the Gut of Earthworm

TL;DR: The results indicate that the gut of soil fauna is a neglected hotspot of antibiotic resistance, and the changes correlated with ARG profiles of the gut microbiota are correlated with that of the earthworm gut microbiota.
References
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Journal ArticleDOI

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar
- 01 Oct 2010 - 
TL;DR: UCLUST is a new clustering method that exploits USEARCH to assign sequences to clusters and offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets.
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FastTree 2--approximately maximum-likelihood trees for large alignments.

TL;DR: Improvements to FastTree are described that improve its accuracy without sacrificing scalability, and FastTree 2 allows the inference of maximum-likelihood phylogenies for huge alignments.
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PyNAST: a flexible tool for aligning sequences to a template alignment

TL;DR: PyNAST as discussed by the authors is a complete reimplementation of NAST, which includes three convenient interfaces: a Mac OS X GUI, a command-line interface and a simple application programming interface (API).
Journal ArticleDOI

rrndb: the Ribosomal RNA Operon Copy Number Database

TL;DR: This work has created a phylogenetically arranged report on rRNA gene copy number for a diverse collection of prokaryotic microorganisms in an attempt to understand the evolutionary implications of rRNA operon redundancy.
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