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Open AccessJournal ArticleDOI

Effects of maturation on the conformational free-energy landscape of SOD1.

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TLDR
In this paper, the authors examined further states of SOD1 along its maturation pathway, as well as those off-pathway resulting from metal loss that have been observed in proteinaceous inclusions.
Abstract
Amyotrophic lateral sclerosis (ALS) is a devastating fatal syndrome characterized by very rapid degeneration of motor neurons. A leading hypothesis is that ALS is caused by toxic protein misfolding and aggregation, as also occurs in many other neurodegenerative disorders, such as prion, Alzheimer’s, Parkinson’s, and Huntington’s diseases. A prominent cause of familial ALS is mutations in the protein superoxide dismutase (SOD1), which promote the formation of misfolded SOD1 conformers that are prone to aberrant interactions both with each other and with other cellular components. We have shown previously that immature SOD1, lacking bound Cu and Zn metal ions and the intrasubunit disulfide bond (apoSOD12SH), has a rugged free-energy surface (FES) and exchanges with four other conformations (excited states) that have millisecond lifetimes and sparse populations on the order of a few percent. Here, we examine further states of SOD1 along its maturation pathway, as well as those off-pathway resulting from metal loss that have been observed in proteinaceous inclusions. Metallation and disulfide bond formation lead to structural transformations including local ordering of the electrostatic loop and native dimerization that are observed in rare conformers of apoSOD12SH; thus, SOD1 maturation may occur via a population-switch mechanism whereby posttranslational modifications select for preexisting structures on the FES. Metallation and oxidation of SOD1 stabilize the native, mature conformation and decrease the number of detected excited conformational states, suggesting that it is the immature forms of the protein that contribute to misfolded conformations in vivo rather than the highly stable enzymatically active dimer.

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Journal ArticleDOI

Visualizing and trapping transient oligomers in amyloid assembly pathways.

TL;DR: Use of methods capable of detecting lowly-populated species within complex mixtures, such as NMR, single particle methods, and mass spectrometry, and chemical and biological tools to bias the amyloid energy landscape towards specific oligomeric states are discussed.
Journal ArticleDOI

NMR spectroscopy captures the essential role of dynamics in regulating biomolecular function.

TL;DR: In this article, the authors demonstrate how nuclear magnetic resonance (NMR) spectroscopy provides an essential, dynamic view of structural biology that captures biomolecular motions at atomic resolution.
Journal ArticleDOI

Unveiling invisible protein states with NMR spectroscopy

TL;DR: Recent progress toward understanding the roles of sparsely populated, otherwise 'invisible' states present in protein folding and misfolding is reviewed, where NMR has provided unique insight into folding intermediates, transiently misfolded states, and soluble oligomers that precede amyloid fibril formation.
Journal ArticleDOI

Structural Properties and Interaction Partners of Familial ALS-Associated SOD1 Mutants.

TL;DR: The goal is to find clues to the possible internal links between structural and functional anomalies of SOD1 mutants, as well as the relationships between their exposed epitopes and interaction partners, in order to help reveal and determine potential diagnostic and therapeutic targets.
References
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Journal ArticleDOI

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

TL;DR: The asynchronous pipeline scheme provides other substantial advantages, including high flexibility, favorable processing speeds, choice of both all-in-memory and disk-bound processing, easy adaptation to different data formats, simpler software development and maintenance, and the ability to distribute processing tasks on multi-CPU computers and computer networks.
Journal ArticleDOI

Motor neuron degeneration in mice that express a human Cu,Zn superoxide dismutase mutation.

TL;DR: In this article, the authors found that mutations of human Cu,Zn superoxide dismutase (SOD) contribute to the pathogenesis of familial amyotrophic lateral sclerosis (ALS).
Journal ArticleDOI

Backbone Dynamics of a Free and a Phosphopeptide-Complexed Src Homology 2 Domain Studied by 15N NMR Relaxation

TL;DR: Overall, higher order parameters were not found in the peptide-bound form, indicating that on average, picosecond-time-scale disorder is not reduced upon binding peptide, and the relaxation data of the SH2-phosphopeptide complex were fit with fewer exchange terms than the uncomplexed form.
Book

Protein NMR Spectroscopy: Principles and Practice

John Cavanagh
TL;DR: In this article, theoretical description of NMR Spectroscopy and its application in NMR spectroscopy is presented. But, the authors focus on the theoretical aspects of NMS, and not on the experimental aspects.
Journal ArticleDOI

Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease.

TL;DR: The use of novel two-dimensional nuclear magnetic resonance (NMR) pulse sequences to provide insight into protein dynamics is described, suggesting that there is no correlation between these rapid small amplitude motions and secondary structure for S. Nase.
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