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Open AccessJournal ArticleDOI

Error-Controlled Exploration of Chemical Reaction Networks with Gaussian Processes.

Gregor N. Simm, +1 more
- 04 Sep 2018 - 
- Vol. 14, Iss: 10, pp 5238-5248
TLDR
A new approach is presented that allows for the systematic, problem-oriented, and rolling improvement of quantum chemical results through the application of Gaussian processes, due to its Bayesian nature.
Abstract
For a theoretical understanding of the reactivity of complex chemical systems, relative energies of stationary points on potential energy hypersurfaces need to be calculated to high accuracy. Due to the large number of intermediates present in all but the simplest chemical processes, approximate quantum chemical methods are required that allow for fast evaluations of the relative energies but at the expense of accuracy. Despite the plethora of benchmark studies, the accuracy of a quantum chemical method is often difficult to assess. Moreover, a significant improvement of a method’s accuracy (e.g., through reparameterization or systematic model extension) is rarely possible. Here, we present a new approach that allows for the systematic, problem-oriented, and rolling improvement of quantum chemical results through the application of Gaussian processes. Due to its Bayesian nature, reliable error estimates are provided for each prediction. A reference method of high accuracy can be employed if the uncertaint...

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Citations
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Journal ArticleDOI

Automated exploration of the low-energy chemical space with fast quantum chemical methods

TL;DR: An efficient scheme for the in silico sampling for parts of the molecular chemical space by semiempirical tight-binding methods combined with a meta-dynamics driven search algorithm is proposed and discussed, opening many possible applications in modern computational chemistry and drug discovery.
Journal ArticleDOI

Machine learning for interatomic potential models

TL;DR: An overview of three emerging approaches to developing machine-learned interatomic potential models that have not been extensively discussed in existing reviews: moment tensor potentials, message-passing networks, and symbolic regression are included.
Journal ArticleDOI

Quantum Machine Learning in Chemical Compound Space.

TL;DR: The case is made for quantum machine learning: An inductive molecular modeling approach which can be applied to quantum chemistry problems.
Journal ArticleDOI

A quantitative uncertainty metric controls error in neural network-driven chemical discovery

TL;DR: In this paper, the authors introduce the distance to available data in the latent space of a neural network ML model as a low-cost, quantitative uncertainty metric that works for both inorganic and organic chemistry.
Journal ArticleDOI

Exploration of Reaction Pathways and Chemical Transformation Networks

TL;DR: The different algorithmic approaches for the investigation of chemical reaction networks differ in their application range, the level of completeness of the exploration, and the amount of heuristics and human intervention required.
References
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Journal ArticleDOI

Generalized Gradient Approximation Made Simple

TL;DR: A simple derivation of a simple GGA is presented, in which all parameters (other than those in LSD) are fundamental constants, and only general features of the detailed construction underlying the Perdew-Wang 1991 (PW91) GGA are invoked.
Journal ArticleDOI

Inhomogeneous Electron Gas

TL;DR: In this article, the ground state of an interacting electron gas in an external potential was investigated and it was proved that there exists a universal functional of the density, called F[n(mathrm{r})], independent of the potential of the electron gas.
Journal ArticleDOI

Matplotlib: A 2D Graphics Environment

TL;DR: Matplotlib is a 2D graphics package used for Python for application development, interactive scripting, and publication-quality image generation across user interfaces and operating systems.
Proceedings ArticleDOI

Data Structures for Statistical Computing in Python

Wes McKinney
TL;DR: P pandas is a new library which aims to facilitate working with data sets common to finance, statistics, and other related fields and to provide a set of fundamental building blocks for implementing statistical models.
Journal ArticleDOI

Gaussian Basis Functions for Use in Molecular Calculations. III. Contraction of (10s6p) Atomic Basis Sets for the First‐Row Atoms

TL;DR: In this paper, the effects of contraction on the energies and one-electron properties of the water and nitrogen molecules were investigated, and the authors obtained principles which can be used to predict optimal contraction schemes for other systems without the necessity of such exhaustive calculations.
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