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GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains.

TLDR
It is shown that GI expression is regulated by the circadian clock with a peak in transcript levels 8–10 h after dawn and that CCA1 and LHY expression are reduced by gi mutations, consistent with the idea that GI plays an important role in regulating the expression of flowering time genes during the promotion of flowering by photoperiod.
Abstract
Flowering of Arabidopsis is promoted by long days and delayed by short days. Mutations in the GIGANTEA (GI) gene delay flowering under long days but have little or no effect under short days. We have now isolated the GI gene and show that it encodes a novel, putative membrane protein. By comparing the sequence of the Arabidopsis gene with that of a likely rice orthologue and by sequencing mutant alleles, we identify regions of the GI protein that are likely to be important for its function. We show that GI expression is regulated by the circadian clock with a peak in transcript levels 8-10 h after dawn. The timing, height and duration of this peak are influenced by daylength. We analysed the interactions between GI and the LHY, CCA1 and ELF3 genes, previously shown to affect daylength responses; we show that the rhythmic pattern of GI expression is altered in the elf3, CCA1-OX and lhy genotypes, and that CCA1 and LHY expression are reduced by gi mutations. Our results are consistent with the idea that GI plays an important role in regulating the expression of flowering time genes during the promotion of flowering by photoperiod.

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Journal ArticleDOI

Arabidopsis Transcriptome Profiling Indicates That Multiple Regulatory Pathways Are Activated during Cold Acclimation in Addition to the CBF Cold Response Pathway

TL;DR: Significantly, CBF expression at warm temperatures repressed the expression of eight genes that also were downregulated by low temperature, indicating that in addition to gene induction, gene repression is likely to play an integral role in cold acclimation.
Journal ArticleDOI

Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS

TL;DR: It is suggested that Hd1 functions in the promotion of heading under short- day conditions and in inhibition under long-day conditions and is a homolog of CONSTANS in Arabidopsis.
Journal ArticleDOI

CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis

TL;DR: It is shown that expression of CONSTANS (CO), a gene that accelerates flowering in response to long days, is modulated by the circadian clock and day length, suggesting mechanisms by which day length regulates flowering time.
Journal ArticleDOI

The genetic basis of flowering responses to seasonal cues

TL;DR: Progress is reported in defining the diverse genetic mechanisms that enable plants to recognize winter, spring and autumn to initiate flower development.
Journal ArticleDOI

Gene Expression Profiles during the Initial Phase of Salt Stress in Rice

TL;DR: Transcript regulation in response to high salinity was investigated for salt-tolerant rice with microarrays including 1728 cDNAs from libraries of salt-stressed roots and the interpretation of an adaptive process was supported by the similar analysis of salinity-sensitive rice.
References
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Journal ArticleDOI

Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer

TL;DR: The efficacy of this cDNA cloning strategy was demonstrated by isolating cDNA clones of mRNA from int-2, a mouse gene that expresses four different transcripts at low abundance, the longest of which is approximately 2.9 kilobases.
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Molecular Bases for Circadian Clocks

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CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases

TL;DR: A recessive Arabidopsis mutant, ctr1, that constitutively exhibits seedling and adult phenotypes observed in plants treated with the plant hormone ethylene is isolated and the DNA sequences of four mutant alleles were determined.
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Membrane protein structure prediction: Hydrophobicity analysis and the positive-inside rule

TL;DR: In this paper, a new strategy for predicting the topology of bacterial inner membrane proteins is proposed on the basis of hydrophobicity analysis, automatic generation of a set of possible topologies and ranking of these according to the positive inside rule.
Journal ArticleDOI

A knowledge base for predicting protein localization sites in eukaryotic cells

TL;DR: An expert system is reported for predicting localization sites of proteins only from the information on the amino acid sequence and the source origin, which is powerful and flexible enough to be used in genome analyses.
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