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Open AccessJournal ArticleDOI

Graph convolutional networks: a comprehensive review

TLDR
A comprehensive review specifically on the emerging field of graph convolutional networks, which is one of the most prominent graph deep learning models, is conducted and several open challenges are presented and potential directions for future research are discussed.
Abstract
Graphs naturally appear in numerous application domains, ranging from social analysis, bioinformatics to computer vision. The unique capability of graphs enables capturing the structural relations among data, and thus allows to harvest more insights compared to analyzing data in isolation. However, it is often very challenging to solve the learning problems on graphs, because (1) many types of data are not originally structured as graphs, such as images and text data, and (2) for graph-structured data, the underlying connectivity patterns are often complex and diverse. On the other hand, the representation learning has achieved great successes in many areas. Thereby, a potential solution is to learn the representation of graphs in a low-dimensional Euclidean space, such that the graph properties can be preserved. Although tremendous efforts have been made to address the graph representation learning problem, many of them still suffer from their shallow learning mechanisms. Deep learning models on graphs (e.g., graph neural networks) have recently emerged in machine learning and other related areas, and demonstrated the superior performance in various problems. In this survey, despite numerous types of graph neural networks, we conduct a comprehensive review specifically on the emerging field of graph convolutional networks, which is one of the most prominent graph deep learning models. First, we group the existing graph convolutional network models into two categories based on the types of convolutions and highlight some graph convolutional network models in details. Then, we categorize different graph convolutional networks according to the areas of their applications. Finally, we present several open challenges in this area and discuss potential directions for future research.

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Journal ArticleDOI

Deep Graph Convolutional Reinforcement Learning for Financial Portfolio Management - DeepPocket

TL;DR: In this paper, a graph convolutional reinforcement learning framework called DeepPocket is proposed whose objective is to exploit the time-varying interrelations between financial instruments, represented by a graph whose nodes correspond to the financial instruments while the edges correspond to a pair-wise correlation function in between assets.
Journal ArticleDOI

Data‐Driven High‐Throughput Rational Design of Double‐Atom Catalysts for Oxygen Evolution and Reduction

TL;DR: This data‐driven high‐throughput approach not only yields remarkable prediction precision (>0.926 R‐squared) but also enables a notable 144 000‐fold reduction of screening time compared with pure DFT calculations, holding promise to drastically accelerate the design of high‐performance DACs.
Journal ArticleDOI

KGEL: A novel end-to-end embedding learning framework for knowledge graph completion

TL;DR: A novel end-to-end KG embedding learning framework that consists of an encoder of a dual weighted graph convolutional network, and a decoder ofA novel fully expressive tensor factorization model that consistently marks performance gains over several previous models on recent standard link prediction datasets.
Journal ArticleDOI

Parallel and Distributed Graph Neural Networks: An In-Depth Concurrency Analysis

Maciej Besta, +1 more
- 19 May 2022 - 
TL;DR: A taxonomy of parallelism in GNNs is designed, considering data and model parallelism, and different forms of pipelining, and the outcomes are synthesized in a set of insights that help to maximize GNN performance, and a comprehensive list of challenges and opportunities for further research into GNN computations.
Journal ArticleDOI

Protein–protein interaction prediction with deep learning: A comprehensive review

TL;DR: A review of deep learning methods applied to problems including predicting protein functions, protein-protein interaction and their sites, proteinligand binding, and protein design can be found in this article .
References
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Proceedings ArticleDOI

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TL;DR: In this article, the authors proposed a residual learning framework to ease the training of networks that are substantially deeper than those used previously, which won the 1st place on the ILSVRC 2015 classification task.
Proceedings Article

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Proceedings Article

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Proceedings Article

Very Deep Convolutional Networks for Large-Scale Image Recognition

TL;DR: In this paper, the authors investigated the effect of the convolutional network depth on its accuracy in the large-scale image recognition setting and showed that a significant improvement on the prior-art configurations can be achieved by pushing the depth to 16-19 layers.
Proceedings ArticleDOI

Fully convolutional networks for semantic segmentation

TL;DR: The key insight is to build “fully convolutional” networks that take input of arbitrary size and produce correspondingly-sized output with efficient inference and learning.
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