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Microbial cellulose utilization: fundamentals and biotechnology.

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TLDR
A concluding discussion identifies unresolved issues pertaining to microbial cellulose utilization, suggests approaches by which such issues might be resolved, and contrasts a microbially oriented cellulose hydrolysis paradigm to the more conventional enzymatically oriented paradigm in both fundamental and applied contexts.
Abstract
Fundamental features of microbial cellulose utilization are examined at successively higher levels of aggregation encompassing the structure and composition of cellulosic biomass, taxonomic diversity, cellulase enzyme systems, molecular biology of cellulase enzymes, physiology of cellulolytic microorganisms, ecological aspects of cellulase-degrading communities, and rate-limiting factors in nature. The methodological basis for studying microbial cellulose utilization is considered relative to quantification of cells and enzymes in the presence of solid substrates as well as apparatus and analysis for cellulose-grown continuous cultures. Quantitative description of cellulose hydrolysis is addressed with respect to adsorption of cellulase enzymes, rates of enzymatic hydrolysis, bioenergetics of microbial cellulose utilization, kinetics of microbial cellulose utilization, and contrasting features compared to soluble substrate kinetics. A biological perspective on processing cellulosic biomass is presented, including features of pretreated substrates and alternative process configurations. Organism development is considered for "consolidated bioprocessing" (CBP), in which the production of cellulolytic enzymes, hydrolysis of biomass, and fermentation of resulting sugars to desired products occur in one step. Two organism development strategies for CBP are examined: (i) improve product yield and tolerance in microorganisms able to utilize cellulose, or (ii) express a heterologous system for cellulose hydrolysis and utilization in microorganisms that exhibit high product yield and tolerance. A concluding discussion identifies unresolved issues pertaining to microbial cellulose utilization, suggests approaches by which such issues might be resolved, and contrasts a microbially oriented cellulose hydrolysis paradigm to the more conventional enzymatically oriented paradigm in both fundamental and applied contexts.

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Journal ArticleDOI

A rapid microassay to evaluate enzymatic hydrolysis of lignocellulosic substrates.

TL;DR: A rapid assay for lignocellulose hydrolysis has been developed and shows considerable time and cost benefits over the standard assay protocol and is applicable to a broad range of lignOcellulosic substrates.
Journal ArticleDOI

Cellulase recycling in biorefineries—is it possible?

TL;DR: The fundamentals of the enzyme recycling technology, more specifically, cellulase recycling are described and the main strategies available for the recovery of both the liquid- and solid-bound enzyme fractions are discussed and the relevant operational parameters are discussed.
Journal ArticleDOI

Mutations in the Scaffoldin Gene, cipA, of Clostridium thermocellum with Impaired Cellulosome Formation and Cellulose Hydrolysis: Insertions of a New Transposable Element, IS1447, and Implications for Cellulase Synergism on Crystalline Cellulose

TL;DR: The results identify a genetic basis for the synergistic effect of complex formation on crystalline-cellulose degradation and identify a new insertion element, IS1447, belonging to the IS3 family, that allows transposition without the need of a defined target DNA sequence.
Journal ArticleDOI

Lic16A of Clostridium thermocellum, a non-cellulosomal, highly complex endo-beta-1,3-glucanase bound to the outer cell surface.

TL;DR: The recombinant Lic16A protein was characterized as an endo-1,3(4)-beta-glucanase with a specific activity of 2680 and 340 U mg(-1) and a K(m) of 0.94 and 2.1 mg ml (-1) towards barley beta- glucan and laminarin, respectively.
Journal ArticleDOI

Biochemical and structural characterization of a novel halotolerant cellulase from soil metagenome.

TL;DR: The newly identified endoglucanase Cel5R, obtained from soil metagenome that shows high halotolerance and thermal stability, is a promising candidate for various industrial applications.
References
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Journal ArticleDOI

A classification of glycosyl hydrolases based on amino acid sequence similarities.

TL;DR: With the steady increase in sequence and structural data, it is suggested that the enzyme classification system should perhaps be revised.
Journal ArticleDOI

New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.

TL;DR: On the basis of a comparison of 482 sequences corresponding to 52 EC entries, 45 families, out of which 22 are polyspecific, can now be defined and has been implemented in the SWISS-PROT protein sequence data bank.
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