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Microbial cellulose utilization: fundamentals and biotechnology.

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TLDR
A concluding discussion identifies unresolved issues pertaining to microbial cellulose utilization, suggests approaches by which such issues might be resolved, and contrasts a microbially oriented cellulose hydrolysis paradigm to the more conventional enzymatically oriented paradigm in both fundamental and applied contexts.
Abstract
Fundamental features of microbial cellulose utilization are examined at successively higher levels of aggregation encompassing the structure and composition of cellulosic biomass, taxonomic diversity, cellulase enzyme systems, molecular biology of cellulase enzymes, physiology of cellulolytic microorganisms, ecological aspects of cellulase-degrading communities, and rate-limiting factors in nature. The methodological basis for studying microbial cellulose utilization is considered relative to quantification of cells and enzymes in the presence of solid substrates as well as apparatus and analysis for cellulose-grown continuous cultures. Quantitative description of cellulose hydrolysis is addressed with respect to adsorption of cellulase enzymes, rates of enzymatic hydrolysis, bioenergetics of microbial cellulose utilization, kinetics of microbial cellulose utilization, and contrasting features compared to soluble substrate kinetics. A biological perspective on processing cellulosic biomass is presented, including features of pretreated substrates and alternative process configurations. Organism development is considered for "consolidated bioprocessing" (CBP), in which the production of cellulolytic enzymes, hydrolysis of biomass, and fermentation of resulting sugars to desired products occur in one step. Two organism development strategies for CBP are examined: (i) improve product yield and tolerance in microorganisms able to utilize cellulose, or (ii) express a heterologous system for cellulose hydrolysis and utilization in microorganisms that exhibit high product yield and tolerance. A concluding discussion identifies unresolved issues pertaining to microbial cellulose utilization, suggests approaches by which such issues might be resolved, and contrasts a microbially oriented cellulose hydrolysis paradigm to the more conventional enzymatically oriented paradigm in both fundamental and applied contexts.

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A biorefinery concept using the green macroalgae Chaetomorpha linum for the coproduction of bioethanol and biogas

TL;DR: In this paper, an innovative integrated biorefinery approach using the green macroalgae Chaetomorpha linum was investigated for the co-production of bioethanol and biogas.
Journal ArticleDOI

Synthetic Microbial Ecology: Engineering Habitats for Modular Consortia.

TL;DR: This concept paper aims to capitalize on ecological insights into the spatial and modular design of interlinked microbial consortia that would overcome limitations of natural systems and attempt to optimize the functionality of the members and the performance of the engineered consortium.
Journal ArticleDOI

Opportunities and prospects of biorefinery-based valorisation of pulp and paper sludge.

TL;DR: Assessment of selected processes for biorefinery varies from a detailed analysis of a single process to high level optimisation and integration of the processes, which allow the initial assessment and comparison of technologies.
Journal ArticleDOI

Product inhibition of five Hypocrea jecorina cellulases.

TL;DR: It is shown that product inhibition of mono-component cellulases hydrolyzing unmodified cellulose may be monitored by calorimetry, and the key advantage of this approach is that it directly measures the rate of hydrolysis while being essentially blind to the background of added product.
Journal ArticleDOI

The potential of microbial processes for lignocellulosic biomass conversion to ethanol: a review

TL;DR: In this paper, the feasibility of a single or multi-stage process entirely based on microbial cultures, with no or minimal non-biological pretreatment and with no external enzyme addition, for the conversion of lignocellulosic materials into ethanol was assessed.
References
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Journal ArticleDOI

A classification of glycosyl hydrolases based on amino acid sequence similarities.

TL;DR: With the steady increase in sequence and structural data, it is suggested that the enzyme classification system should perhaps be revised.
Journal ArticleDOI

New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.

TL;DR: On the basis of a comparison of 482 sequences corresponding to 52 EC entries, 45 families, out of which 22 are polyspecific, can now be defined and has been implemented in the SWISS-PROT protein sequence data bank.
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