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Open AccessJournal ArticleDOI

New) Methods for Detection of Aspergillus fumigatus Resistance in Clinical Samples.

TLDR
New molecular-based approaches for detecting triazole resistance to Aspergillus, real-time polymerase chain reaction (PCR) to detect mutations to the Cyp51A protein, have been developed which are able to detect mostTriazole-resistant A. fumigatus strains in patients with invasive aspergillosis.
Abstract
The incidence of invasive aspergillosis has increased substantially over the past few decades, accompanied by a change in susceptibility patterns of Aspergillus fumigatus with increasing resistance observed against triazole antifungals, including voriconazole and isavuconazole, the most commonly used antifungal agents for the disease. Culture-based methods for determining triazole resistance are still the gold standard but are time consuming and lack sensitivity. We sought to provide an update on non-culture-based methods for detecting resistance patterns to Aspergillus. New molecular-based approaches for detecting triazole resistance to Aspergillus, real-time polymerase chain reaction (PCR) to detect mutations to the Cyp51A protein, have been developed which are able to detect most triazole-resistant A. fumigatus strains in patients with invasive aspergillosis. Over the last few years, a number of non-culture-based methods for molecular detection of Aspergillus triazole resistance have been developed that may overcome some of the limitations of culture. These molecular methods are therefore of high epidemiological and clinical relevance, mainly in immunocompromised patients with hematological malignancies, where culture has particularly limited sensitivity. These assays are now able to detect most triazole-resistant Aspergillus fumigatus strains. Given that resistance rates vary, clinical utility for these assays still depends on regional resistance patterns.

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Invasive aspergillosis in critically ill patients: Review of definitions and diagnostic approaches.

TL;DR: Invasive aspergillosis (IA) is an increasingly recognised phenomenon in critically ill patients in the intensive care unit, including in patients with severe influenza and severe coronavirus disease 2019 (COVID-19) infection as mentioned in this paper.
Journal ArticleDOI

Detecting Azole-Antifungal Resistance in Aspergillus fumigatus by Pyrosequencing.

TL;DR: Current diagnostic methods are reviewed and the potential of pyrosequencing to aid in a diagnosis complete with a resistance profile to improve clinical outcomes is highlighted.
Journal ArticleDOI

Fungal Infections Diagnosis – Past, Present and Future

TL;DR: A review of the main steps of the diagnosis for systemic fungal infection, from diagnostic classifications, through methodologies considered as the gold standard, to the molecular methods currently used, and finally mentioning some of the more futuristic approaches is presented in this paper.
References
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Journal ArticleDOI

Performance of Molecular Approaches for Aspergillus Detection and Azole Resistance Surveillance in Cystic Fibrosis.

TL;DR: Combined with culture, PCR assay achieved high sensitivity Aspergillus screening in CF samples, however, cyp51A targeting was only moderately effective for azole resistance monitoring, while As pergillus resistance remains of great concern.
Journal ArticleDOI

Improving the rates of Aspergillus detection: an update on current diagnostic strategies.

TL;DR: Several new diagnostics for IA (including point-of-care tests) are now available to complement galactomannan testing, and immunoPET/MRI imaging may be a promising approach for diagnosing IA in the near future.
Journal ArticleDOI

Antifungal Susceptibility Testing of Aspergillus spp. by Using a Composite Correlation Index (CCI)-Based Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Method Appears To Not Offer Benefit over Traditional Broth Microdilution Testing.

TL;DR: It is demonstrated that MALDI-TOF MS can be used to accurately detect A. fumigatus strains with reduced voriconazole susceptibility and rather than proving to be a rapid and simple method for antifungal susceptibility testing, this particular MS-based method showed no benefit over conventional testing methods.
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