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Open AccessJournal ArticleDOI

New) Methods for Detection of Aspergillus fumigatus Resistance in Clinical Samples.

TLDR
New molecular-based approaches for detecting triazole resistance to Aspergillus, real-time polymerase chain reaction (PCR) to detect mutations to the Cyp51A protein, have been developed which are able to detect mostTriazole-resistant A. fumigatus strains in patients with invasive aspergillosis.
Abstract
The incidence of invasive aspergillosis has increased substantially over the past few decades, accompanied by a change in susceptibility patterns of Aspergillus fumigatus with increasing resistance observed against triazole antifungals, including voriconazole and isavuconazole, the most commonly used antifungal agents for the disease. Culture-based methods for determining triazole resistance are still the gold standard but are time consuming and lack sensitivity. We sought to provide an update on non-culture-based methods for detecting resistance patterns to Aspergillus. New molecular-based approaches for detecting triazole resistance to Aspergillus, real-time polymerase chain reaction (PCR) to detect mutations to the Cyp51A protein, have been developed which are able to detect most triazole-resistant A. fumigatus strains in patients with invasive aspergillosis. Over the last few years, a number of non-culture-based methods for molecular detection of Aspergillus triazole resistance have been developed that may overcome some of the limitations of culture. These molecular methods are therefore of high epidemiological and clinical relevance, mainly in immunocompromised patients with hematological malignancies, where culture has particularly limited sensitivity. These assays are now able to detect most triazole-resistant Aspergillus fumigatus strains. Given that resistance rates vary, clinical utility for these assays still depends on regional resistance patterns.

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Invasive aspergillosis in critically ill patients: Review of definitions and diagnostic approaches.

TL;DR: Invasive aspergillosis (IA) is an increasingly recognised phenomenon in critically ill patients in the intensive care unit, including in patients with severe influenza and severe coronavirus disease 2019 (COVID-19) infection as mentioned in this paper.
Journal ArticleDOI

Detecting Azole-Antifungal Resistance in Aspergillus fumigatus by Pyrosequencing.

TL;DR: Current diagnostic methods are reviewed and the potential of pyrosequencing to aid in a diagnosis complete with a resistance profile to improve clinical outcomes is highlighted.
Journal ArticleDOI

Fungal Infections Diagnosis – Past, Present and Future

TL;DR: A review of the main steps of the diagnosis for systemic fungal infection, from diagnostic classifications, through methodologies considered as the gold standard, to the molecular methods currently used, and finally mentioning some of the more futuristic approaches is presented in this paper.
References
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Journal ArticleDOI

Azole fungicides - understanding resistance mechanisms in agricultural fungal pathogens.

TL;DR: An overview of the problem is given and the mechanisms that mediate azole resistance in agriculture are discussed (point mutations in the CYP51 amino acid sequence, overexpression of the CyP51 enzyme and overexpressing of genes encoding efflux pump proteins).
Journal ArticleDOI

Emergence of azole-resistant invasive aspergillosis in HSCT recipients in Germany

TL;DR: The emergence of azole-resistant IA with TR34/L98H and TR46/Y121F/T289A mutations in HSCT patients in Germany is highlighted and underscores the need for systematic antifungal susceptibility testing of A. fumigatus.
Journal ArticleDOI

Validation of a New Aspergillus Real-Time PCR Assay for Direct Detection of Aspergillus and Azole Resistance of Aspergillus fumigatus on Bronchoalveolar Lavage Fluid

TL;DR: The AsperGenius multiplex real-time PCR assay allows for sensitive and fast detection of Aspergillus species directly from BAL fluid samples and differentiates wild-type from resistant strains, even if BAL fluid cultures remain negative.
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