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Perception of low red:far-red ratio compromises both salicylic acid- and jasmonic acid-dependent pathogen defences in Arabidopsis.

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TLDR
It is shown that both salicylic acid (SA) and jasmonic acid (JA) disease resistance is inhibited by a simultaneously reduced red:far-red light ratio (R:FR), the early warning signal for plant competition.
Abstract
In dense stands of plants, such as agricultural monocultures, plants are exposed simultaneously to competition for light and other stresses such as pathogen infection. Here, we show that both salicylic acid (SA)-dependent and jasmonic acid (JA)-dependent disease resistance is inhibited by a simultaneously reduced red:far-red light ratio (R:FR), the early warning signal for plant competition. Conversely, SA- and JA-dependent induced defences did not affect shade-avoidance responses to low R:FR. Reduced pathogen resistance by low R:FR was accompanied by a strong reduction in the regulation of JA- and SA-responsive genes. The severe inhibition of SA-responsive transcription in low R:FR appeared to be brought about by the repression of SA-inducible kinases. Phosphorylation of the SA-responsive transcription co-activator NPR1, which is required for full induction of SA-responsive transcription, was indeed reduced and may thus play a role in the suppression of SA-mediated defences by low R:FR-mediated phytochrome inactivation. Our results indicate that foraging for light through the shade-avoidance response is prioritised over plant immune responses when plants are simultaneously challenged with competition and pathogen attack.

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Growth-defense tradeoffs in plants: a balancing act to optimize fitness.

TL;DR: Evidence supporting the growth-defense tradeoff concept is addressed, as well as known interactions between defense signaling and growth signaling, which should provide a foundation for the development of breeding strategies to maximize crop yield to meet rising global food and biofuel demands.
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Light regulation of plant defense.

TL;DR: The discovery of connections between photoreceptors and defense signaling is revealing novel mechanisms that control key resource allocation decisions in plant canopies.
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Trade-Offs Between Plant Growth and Defense Against Insect Herbivory: An Emerging Mechanistic Synthesis

TL;DR: A unifying framework for growth-defense trade-offs is proposed as a means to study the plant's allocation of limiting resources and the diversity of selective pressures on plants often favors negative correlations at intermediate trait levels.
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The shade‐avoidance syndrome: multiple signals and ecological consequences

TL;DR: It is suggested that it might be possible to improve crop health at high planting densities by targeting links between phyB and JA signalling, in particular salicylic acid and jasmonic acid.
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Light signaling and plant responses to blue and UV radiations—Perspectives for applications in horticulture

TL;DR: An overview of UV- and blue-radiations signaling pathways in some key physiological processes is presented and effects of plant exposure to these wavelengths on phenotype as well as on contents in useful metabolites and resistance to bio aggressors are described.
References
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Journal ArticleDOI

Analysis of relative gene expression data using real-time quantitative pcr and the 2(-delta delta c(t)) method

TL;DR: The 2-Delta Delta C(T) method as mentioned in this paper was proposed to analyze the relative changes in gene expression from real-time quantitative PCR experiments, and it has been shown to be useful in the analysis of realtime, quantitative PCR data.
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Controlling the false discovery rate: a practical and powerful approach to multiple testing

TL;DR: In this paper, a different approach to problems of multiple significance testing is presented, which calls for controlling the expected proportion of falsely rejected hypotheses -the false discovery rate, which is equivalent to the FWER when all hypotheses are true but is smaller otherwise.
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Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

TL;DR: The hierarchical model of Lonnstedt and Speed (2002) is developed into a practical approach for general microarray experiments with arbitrary numbers of treatments and RNA samples and the moderated t-statistic is shown to follow a t-distribution with augmented degrees of freedom.
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Two simple media for the demonstration of pyocyanin and fluorescin.

TL;DR: Two simple media for the enhancement of pigment production by certain organisms of the Pseudomonas genus are described and the results of comparative studies employing these media, certain synthetic broths, and some commonly used dehydrated preparations are reported.
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BiNGO : a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks

TL;DR: The Biological Networks Gene Ontology tool (BiNGO) is an open-source Java tool to determine whichGene Ontology terms are significantly overrepresented in a set of genes.
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