Journal ArticleDOI
Profiling the Clostridia with butyrate-producing potential in the mud of Chinese liquor fermentation cellar.
Chai Lijuan,Peng-Xiang Xu,Wei Qian,Xiaojuan Zhang,Jian Ma,Zhen-Ming Lu,Wang Songtao,Cai-Hong Shen,Jin-Song Shi,Zhenghong Xu +9 more
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TLDR
A perspective on targeting and isolating specific functional microbes in baijiu microbiota with the gene sequence-based medium prediction method is provided.About:
This article is published in International Journal of Food Microbiology.The article was published on 2019-05-16. It has received 60 citations till now. The article focuses on the topics: Butyrate kinase & Clostridia.read more
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Flavor mystery of Chinese traditional fermented baijiu: The great contribution of ester compounds.
Xiuting Li,Youqiang Xu,Jingrong Zhao,Xiao Liu,Chunsheng Zhang,Zhigang Zhao,Xiuting Li,Baoguo Sun +7 more
TL;DR: This review systematically summarizes all the 510 esters and finds 9 ethyl esters contribute greatly to the flavor of baijiu.
Journal ArticleDOI
Flavor mystery of Chinese traditional fermented baijiu: The great contribution of ester compounds
TL;DR: Li et al. as discussed by the authors systematically summarized all the 510 esters and found 9 ethyl esters contribute greatly to the flavor of baijiu, and the determination of minimum functional microbial groups and the analysis of their metabolic characteristics are crucial to reveal the mechanism of formation of bhaijiu flavor, and ensure the reproducible formation of flavor substances.
Journal ArticleDOI
Can we control microbiota in spontaneous food fermentation? – Chinese liquor as a case example
TL;DR: Modelling can be used to predict, optimize and control the flavour compound formation by the synthetic microbiota, so that such spontaneous food fermentations can become controllable, with the ultimate goal to monitor, control, and improve the quality, productivity and safety of fermented foods.
Journal ArticleDOI
Succession rate of microbial community causes flavor difference in strong-aroma Baijiu making process.
TL;DR: The importance of microbial succession rate during strong-aroma Baijiu making process is highlighted and a dynamic perspective to observe solid-state fermentation is provided and molecular ecological network analysis (MENA) showed that succession rate of microbial community could affect microbial interactions.
Journal ArticleDOI
Bioturbation effect of fortified Daqu on microbial community and flavor metabolite in Chinese strong-flavor liquor brewing microecosystem.
TL;DR: The results indicated that the bioturbation of fortified Daqu is feasible for flavor metabolism by interspecies interactions of functional microbiota in liquor fermentation, and is of great importance for regulating Chinese liquor and even other foods fermentation by biOTurbation.
References
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QIIME allows analysis of high-throughput community sequencing data.
J. Gregory Caporaso,Justin Kuczynski,Jesse Stombaugh,Kyle Bittinger,Frederic D. Bushman,Elizabeth K. Costello,Noah Fierer,Antonio Gonzalez Peña,Julia K. Goodrich,Jeffrey I. Gordon,Gavin A. Huttley,Scott T. Kelley,Dan Knights,Jeremy E. Koenig,Ruth E. Ley,Catherine A. Lozupone,Daniel McDonald,Brian D. Muegge,Meg Pirrung,Jens Reeder,Joel Sevinsky,Peter J. Turnbaugh,William A. Walters,Jeremy Widmann,Tanya Yatsunenko,Jesse R. Zaneveld,Rob Knight,Rob Knight +27 more
TL;DR: An overview of the analysis pipeline and links to raw data and processed output from the runs with and without denoising are provided.
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Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
TL;DR: The RDP Classifier can rapidly and accurately classify bacterial 16S rRNA sequences into the new higher-order taxonomy proposed in Bergey's Taxonomic Outline of the Prokaryotes, and the majority of the classification errors appear to be due to anomalies in the current taxonomies.
Journal ArticleDOI
UCHIME improves sensitivity and speed of chimera detection
TL;DR: UCHIME has better sensitivity than ChimeraSlayer (previously the most sensitive database method), especially with short, noisy sequences, and in testing on artificial bacterial communities with known composition, UCHIME de novo sensitivity is shown to be comparable to Perseus.
Journal ArticleDOI
UPARSE: highly accurate OTU sequences from microbial amplicon reads
TL;DR: The UPARSE pipeline reports operational taxonomic unit (OTU) sequences with ≤1% incorrect bases in artificial microbial community tests, compared with >3% correct bases commonly reported by other methods.
Journal ArticleDOI
FLASH: Fast Length Adjustment of Short Reads to Improve Genome Assemblies
Tanja Magoc,Steven L. Salzberg +1 more
TL;DR: FLASH is a fast computational tool to extend the length of short reads by overlapping paired-end reads from fragment libraries that are sufficiently short and when FLASH was used to extend reads prior to assembly, the resulting assemblies had substantially greater N50 lengths for both contigs and scaffolds.
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