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Open AccessJournal ArticleDOI

Progress in rational methods of cryoprotection in macromolecular crystallography

Thomas Alcorn, +1 more
- 01 Apr 2010 - 
- Vol. 66, Iss: 4, pp 366-373
TLDR
Measurements of the average thermal contractions of 26 different cryosolutions are presented and discussed in conjunction with other recent advances in the rational design of protocols for cryogenic cooling in macromolecular crystallography.
Abstract
Cryogenic cooling of macromolecular crystals is commonly used for X-ray data collection both to reduce crystal damage from radiation and to gather functional information by cryogenically trapping intermediates. However, the cooling process can damage the crystals. Limiting cooling-induced crystal damage often requires cryoprotection strategies, which can involve substantial screening of solution conditions and cooling protocols. Here, recent developments directed towards rational methods for cryoprotection are described. Crystal damage is described in the context of the temperature response of the crystal as a thermodynamic system. As such, the internal and external parts of the crystal typically have different cryoprotection requirements. A key physical parameter, the thermal contraction, of 26 different cryoprotective solutions was measured between 294 and 72 K. The range of contractions was 2–13%, with the more polar cryosolutions contracting less. The potential uses of these results in the development of cryocooling conditions, as well as recent developments in determining minimum cryosolution soaking times, are discussed.

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Journal ArticleDOI

J. Appl. Cryst.の発刊に際して

良二 上田
Journal ArticleDOI

Radiation damage in macromolecular crystallography: what is it and why should we care?

TL;DR: The basic causes of the radiation damage inflicted on macromolecular crystals during diffraction experiments are summarized, as well as the current state of research which attempts to understand and to mitigate it.
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Image formation modeling in cryo-electron microscopy

TL;DR: A forward model that accounts for the specimen's scattering properties, microscope optics, and detector response and suggests that beam-induced specimen movements are relevant in the experiments whereas the influence of the solvent amorphousness can be neglected.
Journal ArticleDOI

Radiation damage in single-particle cryo-electron microscopy: effects of dose and dose rate

TL;DR: The effects of dose and dose-rate were investigated for single-particle cryo-electron microscopy using stroboscopic data collection and a dose- rate effect was observed favoring lower flux densities.
References
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Journal ArticleDOI

The Protein Data Bank

TL;DR: The goals of the PDB are described, the systems in place for data deposition and access, how to obtain further information and plans for the future development of the resource are described.
Journal ArticleDOI

J. Appl. Cryst.の発刊に際して

良二 上田
Journal ArticleDOI

Solvent content of protein crystals.

TL;DR: An analysis of the solvent content of 116 different crystal forms of globular proteins found that in many cases this range will be sufficiently restrictive to enable the probable number of molecules in the crystallographic asymmetric unit to be determined directly from the molecular weight of the protein and the space group and unit cell dimensions of the crystal.
Journal ArticleDOI

Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein–nucleic acid complex crystals

TL;DR: An improved estimator for the probabilities of the number of molecules in the crystallographic asymmetric unit has been implemented, using resolution as additional information.
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