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Reprogramming of genetic networks during initiation of the Fetal Alcohol Syndrome

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TLDR
The findings are consistent with the growing view that developmental exposure to alcohol alters common signaling pathways linking receptor activation to cytoskeletal reorganization and implies cell signals and responses that are integrated by the mitochondrial recognition site for PK11195.
Abstract
Fetal Alcohol Spectrum Disorders (FASD) are birth defects that result from maternal alcohol use. We used a non a priori approach to prioritize candidate pathways during alcohol-induced teratogenicity in early mouse embryos. Two C57BL/6 substrains (B6J, B6N) served as the basis for study. Dosing pregnant dams with alcohol (2× 2.9 g/kg ethanol spaced 4 hr on day 8) induced FASD in B6J at a higher incidence than B6N embryos. Counter-exposure to PK11195 (4 mg/kg) significantly protected B6J embryos but slightly promoted FASD in B6N embryos. Microarray transcript profiling was performed on the embryonic headfold 3 hr after the first maternal alcohol injection (GEO data series accession GSE1074). This analysis revealed metabolic and cellular reprogramming that was substrain-specific and/or PK11195-dependent. Mapping ethanol-responsive KEGG (Kyoto Encyclopedia of Genes and Genomes) pathways revealed down-regulation of ribosomal proteins and proteasome, and up-regulation of glycolysis and pentose phosphate pathway in B6N embryos; and significant up-regulation of tight junction, focal adhesion, adherens junction, and regulation of the actin cytoskeleton (and near-significant up-regulation of Wnt signaling and apoptosis) pathways in both substrains. Expression networks constructed computationally from these altered genes identified entry points for EtOH at several hubs (MAPK1, ALDH3A2, CD14, PFKM, TNFRSF1A, RPS6, IGF1, EGFR, PTEN) and for PK11195 at AKT1. Our findings are consistent with the growing view that developmental exposure to alcohol alters common signaling pathways linking receptor activation to cytoskeletal reorganization. The programmatic shift in cell motility and metabolic capacity further implies cell signals and responses that are integrated by the mitochondrial recognition site for PK11195. Developmental Dynamics 236:613–631, 2007. © 2007 Wiley-Liss, Inc.

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Genetic differences among C57BL/6 substrains.

TL;DR: In this paper, the authors reported the results of screening of the functional deletion of the nicotinamide nucleotide transhydrogenase (Nnt) gene and 1,446 SNPs genotyping among seven C57BL/6 substrains from different sources.
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Zebrafish: as an integrative model for twenty-first century toxicity testing.

TL;DR: The zebrafish embryo is a useful small model for investigating vertebrate development because of its transparency, low cost, transgenic and morpholino capabilities, conservation of cell signaling, and concords with mammalian developmental phenotypes.
Journal ArticleDOI

Alcohol exposure alters DNA methylation profiles in mouse embryos at early neurulation

TL;DR: Significant changes in methylation were seen in imprinted genes, genes known to play roles in cell cycle, growth, apoptosis, cancer, and in a large number of genes associated with olfaction, particularly in genes on chromosomes 7, 10, and X.
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Nrf2-mediated transcriptional induction of antioxidant response in mouse embryos exposed to ethanol in vivo: implications for the prevention of fetal alcohol spectrum disorders.

TL;DR: It is demonstrated that Nrf2 signaling is involved in the induction of antioxidant response in ethanol-exposed embryos and the potency of D3T in inducing antioxidants as well as in diminishing ethanol-induced apoptosis suggests that further exploration of the antiteratogenic effect of this compound will be fruitful.
Journal ArticleDOI

Attention to Background Strain Is Essential for Metabolic Research: C57BL/6 and the International Knockout Mouse Consortium

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References
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Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

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Pattern of malformation in offspring of chronic alcoholic mothers

TL;DR: The similarity in pattern of malformation noted among 8 unrelated children born to mothers who were chronic alcoholics suggests a singular mode of etiology related to an as yet unknown effect of maternal alcoholism.
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Identifying biological themes within lists of genes with EASE

TL;DR: EASE is a customizable software application for rapid biological interpretation of gene lists that result from the analysis of microarray, proteomics, SAGE and other high-throughput genomic data and is robust to varying methods of normalization, intensity calculation and statistical selection of genes.
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