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Alexey M. Kozlov
Researcher at Heidelberg Institute for Theoretical Studies
Publications - 47
Citations - 6754
Alexey M. Kozlov is an academic researcher from Heidelberg Institute for Theoretical Studies. The author has contributed to research in topics: Phylogenetic tree & Tree (data structure). The author has an hindex of 22, co-authored 43 publications receiving 3403 citations.
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Journal ArticleDOI
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.
Alexey M. Kozlov,Diego Darriba,Tomas Flouri,Benoit Morel,Alexandros Stamatakis,Alexandros Stamatakis +5 more
TL;DR: RAxML-NG is presented, a from-scratch re-implementation of the established greedy tree search algorithm of RAxML/ExaML, which offers improved accuracy, flexibility, speed, scalability, and usability compared with RAx ML/ exaML.
Journal ArticleDOI
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
Diego Darriba,David Posada,Alexey M. Kozlov,Alexandros Stamatakis,Alexandros Stamatakis,Benoit Morel,Tomas Flouri +6 more
TL;DR: ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular tools for selecting the best-fit nucleotide and amino acid substitution models, respectively, and introduces several new features, such as ascertainment bias correction, mixture, and free-rate models, or the automatic processing of single partitions.
Journal ArticleDOI
Eleven grand challenges in single-cell data science
David Lähnemann,David Lähnemann,Johannes Köster,Johannes Köster,Ewa Szczurek,Davis J. McCarthy,Davis J. McCarthy,Stephanie C. Hicks,Mark D. Robinson,Catalina A. Vallejos,Catalina A. Vallejos,Kieran R Campbell,Kieran R Campbell,Niko Beerenwinkel,Niko Beerenwinkel,Ahmed Mahfouz,Ahmed Mahfouz,Luca Pinello,Luca Pinello,Pavel Skums,Alexandros Stamatakis,Alexandros Stamatakis,Camille Stephan Otto Attolini,Samuel Aparicio,Samuel Aparicio,Jasmijn A. Baaijens,Marleen Balvert,Marleen Balvert,Buys de Barbanson,Antonio Cappuccio,Giacomo Corleone,Bas E. Dutilh,Bas E. Dutilh,Maria Florescu,Victor Guryev,Rens Holmer,Katharina Jahn,Katharina Jahn,Thamar Jessurun Lobo,Emma M. Keizer,Indu Khatri,Szymon M. Kielbasa,Jan O. Korbel,Alexey M. Kozlov,Tzu Hao Kuo,Boudewijn P. F. Lelieveldt,Boudewijn P. F. Lelieveldt,Ion I. Mandoiu,John C. Marioni,John C. Marioni,John C. Marioni,Tobias Marschall,Tobias Marschall,Felix Mölder,Amir Niknejad,Lukasz Raczkowski,Marcel J. T. Reinders,Marcel J. T. Reinders,Jeroen de Ridder,Antoine-Emmanuel Saliba,Antonios Somarakis,Oliver Stegle,Oliver Stegle,Fabian J. Theis,Huan Yang,Alexander Zelikovsky,Alexander Zelikovsky,Alice C. McHardy,Benjamin J. Raphael,Sohrab P. Shah,Alexander Schönhuth,Alexander Schönhuth +71 more
TL;DR: This compendium is for established researchers, newcomers, and students alike, highlighting interesting and rewarding problems for the coming years in single-cell data science.
Journal ArticleDOI
Evolutionary History of the Hymenoptera
Ralph S. Peters,Lars Krogmann,Christoph Mayer,Alexander Donath,Simon Gunkel,Karen Meusemann,Alexey M. Kozlov,Lars Podsiadlowski,Malte Petersen,Robert Lanfear,Patricia A. Diez,John M. Heraty,Karl M. Kjer,Seraina Klopfstein,Rudolf Meier,Carlo Polidori,Thomas Schmitt,Shanlin Liu,Xin Zhou,Torsten Wappler,Jes Rust,Bernhard Misof,Oliver Niehuis,Oliver Niehuis +23 more
TL;DR: The results reveal that the extant sawfly diversity is largely the result of a previously unrecognized major radiation of phytophagous Hymenoptera that did not lead to wood-dwelling and parasitoidism.
Posted ContentDOI
RAxML-NG: A fast, scalable, and user-friendly tool for maximum likelihood phylogenetic inference
Alexey M. Kozlov,Diego Darriba,Tomas Flouri,Benoit Morel,Alexandros Stamatakis,Alexandros Stamatakis +5 more
TL;DR: RAxML-NG is presented, a from scratch re-implementation of the established greedy tree search algorithm of RAxML/ExaML and offers improved accuracy, flexibility, speed, scalability, and usability.