T
Tomas Flouri
Researcher at University College London
Publications - 82
Citations - 13611
Tomas Flouri is an academic researcher from University College London. The author has contributed to research in topics: Tree (data structure) & Coalescent theory. The author has an hindex of 20, co-authored 77 publications receiving 8171 citations. Previous affiliations of Tomas Flouri include Czech Technical University in Prague & Heidelberg Institute for Theoretical Studies.
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Journal ArticleDOI
VSEARCH: a versatile open source tool for metagenomics
Torbjørn Rognes,Torbjørn Rognes,Tomas Flouri,Tomas Flouri,Ben Nichols,Christopher Quince,Christopher Quince,Frédéric Mahé +7 more
TL;DR: VSEARCH is here shown to be more accurate than USEARCH when performing searching, clustering, chimera detection and subsampling, while on a par with US EARCH for paired-ends read merging and dereplication.
Journal ArticleDOI
Phylogenomics resolves the timing and pattern of insect evolution
Bernhard Misof,Shanlin Liu,Karen Meusemann,Ralph S. Peters,Alexander Donath,Christoph Mayer,Paul B. Frandsen,Jessica L. Ware,Tomas Flouri,Rolf G. Beutel,Oliver Niehuis,Malte Petersen,Fernando Izquierdo-Carrasco,Torsten Wappler,Jes Rust,Andre J. Aberer,Ulrike Aspöck,Ulrike Aspöck,Horst Aspöck,Daniela Bartel,Alexander Blanke,Simon Berger,Alexander Böhm,Thomas R. Buckley,Brett Calcott,Junqing Chen,Frank Friedrich,Makiko Fukui,Mari Fujita,Carola Greve,Peter Grobe,Shengchang Gu,Ying Huang,Lars S. Jermiin,Akito Y. Kawahara,Lars Krogmann,Martin Kubiak,Robert Lanfear,Robert Lanfear,Robert Lanfear,Harald Letsch,Yiyuan Li,Zhenyu Li,Jiguang Li,Haorong Lu,Ryuichiro Machida,Yuta Mashimo,Pashalia Kapli,Pashalia Kapli,Duane D. McKenna,Guanliang Meng,Yasutaka Nakagaki,José Luis Navarrete-Heredia,Michael Ott,Yanxiang Ou,Günther Pass,Lars Podsiadlowski,Hans Pohl,Björn M. von Reumont,Kai Schütte,Kaoru Sekiya,Shota Shimizu,Adam Slipinski,Alexandros Stamatakis,Alexandros Stamatakis,Wenhui Song,Xu Su,Nikolaus U. Szucsich,Meihua Tan,Xuemei Tan,Min Tang,Jingbo Tang,Gerald Timelthaler,Shigekazu Tomizuka,Michelle D. Trautwein,Xiaoli Tong,Toshiki Uchifune,Manfred Walzl,Brian M. Wiegmann,Jeanne Wilbrandt,Benjamin Wipfler,Thomas K. F. Wong,Qiong Wu,Gengxiong Wu,Yinlong Xie,Shenzhou Yang,Qing Yang,David K. Yeates,Kazunori Yoshizawa,Qing Zhang,Rui Zhang,Wenwei Zhang,Yunhui Zhang,Jing Zhao,Chengran Zhou,Lili Zhou,Tanja Ziesmann,Shijie Zou,Yingrui Li,Xun Xu,Yong Zhang,Huanming Yang,Jian Wang,Jun Wang,Karl M. Kjer,Xin Zhou +105 more
TL;DR: The phylogeny of all major insect lineages reveals how and when insects diversified and provides a comprehensive reliable scaffold for future comparative analyses of evolutionary innovations among insects.
Journal ArticleDOI
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.
Alexey M. Kozlov,Diego Darriba,Tomas Flouri,Benoit Morel,Alexandros Stamatakis,Alexandros Stamatakis +5 more
TL;DR: RAxML-NG is presented, a from-scratch re-implementation of the established greedy tree search algorithm of RAxML/ExaML, which offers improved accuracy, flexibility, speed, scalability, and usability compared with RAx ML/ exaML.
Journal ArticleDOI
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
Diego Darriba,David Posada,Alexey M. Kozlov,Alexandros Stamatakis,Alexandros Stamatakis,Benoit Morel,Tomas Flouri +6 more
TL;DR: ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular tools for selecting the best-fit nucleotide and amino acid substitution models, respectively, and introduces several new features, such as ascertainment bias correction, mixture, and free-rate models, or the automatic processing of single partitions.
Journal ArticleDOI
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo
Paschalia Kapli,Sarah Lutteropp,Sarah Lutteropp,Jiajie Zhang,Kassian Kobert,Pavlos Pavlidis,Alexandros Stamatakis,Alexandros Stamatakis,Tomas Flouri,Tomas Flouri +9 more
TL;DR: The multi‐rate PTP is introduced, an improved method that alleviates the theoretical and technical shortcomings of PTP and consistently yields more accurate delimitations with respect to the taxonomy (i.e., identifies more taxonomic species, infers species numbers closer to theTaxonomy).