C
Caroline Belser
Researcher at Université Paris-Saclay
Publications - 44
Citations - 2061
Caroline Belser is an academic researcher from Université Paris-Saclay. The author has contributed to research in topics: Genome & Nanopore sequencing. The author has an hindex of 14, co-authored 34 publications receiving 1306 citations. Previous affiliations of Caroline Belser include French Alternative Energies and Atomic Energy Commission & Centre national de la recherche scientifique.
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Journal ArticleDOI
A reference genome for pea provides insight into legume genome evolution
Jonathan Kreplak,Mohammed-Amin Madoui,Petr Cápal,Petr Novák,Karine Labadie,Grégoire Aubert,Philipp E. Bayer,Krishna K. Gali,Robert A. Syme,Dorrie Main,Anthony Klein,Aurélie Bérard,Iva Vrbová,Cyril Fournier,Leo d’Agata,Caroline Belser,Wahiba Berrabah,Helena Toegelová,Zbyněk Milec,Jan Vrána,HueyTyng Lee,HueyTyng Lee,Ayité Kougbeadjo,Morgane Terezol,Cécile Huneau,Chala J. Turo,Nacer Mohellibi,Pavel Neumann,Matthieu Falque,Karine Gallardo,Rebecca J. McGee,Bunyamin Tar’an,Abdelhafid Bendahmane,Jean-Marc Aury,Jacqueline Batley,Marie-Christine Le Paslier,Noel Ellis,Thomas D. Warkentin,Clarice J. Coyne,Jérôme Salse,David Edwards,Judith Lichtenzveig,Jiří Macas,Jaroslav Doležel,Patrick Wincker,Judith Burstin +45 more
TL;DR: The first annotated chromosome-level reference genome assembly for pea, Gregor Mendel’s original genetic model, provides insights into legume genome evolution and the molecular basis of agricultural traits forpea improvement.
Journal ArticleDOI
Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
Caroline Belser,Benjamin Istace,Erwan Denis,Marion Dubarry,Franc-Christophe Baurens,Cyril Falentin,Mathieu Genete,Wahiba Berrabah,Anne-Marie Chèvre,Régine Delourme,Gwenaëlle Deniot,Philippe Duffé,Stefan Engelen,Arnaud Lemainque,Maria J. Manzanares-Dauleux,Guillaume Martin,Jérôme Morice,Benjamin Noel,Xavier Vekemans,Angélique D'Hont,Mathieu Rousseau-Gueutin,Valérie Barbe,Corinne Cruaud,Patrick Wincker,Jean-Marc Aury +24 more
TL;DR: A strategy based on long reads (MinION or PromethION sequencers) and optical maps (Saphyr system) that can produce chromosome-level assemblies is described and demonstrated applicability by generating high-quality genome sequences for two new dicotyledon morphotypes.
Journal ArticleDOI
Oak genome reveals facets of long lifespan.
Christophe Plomion,Jean-Marc Aury,Joelle Amselem,Thibault Leroy,Florent Murat,Sébastien Duplessis,Sébastien Faye,Nicolas Francillonne,Karine Labadie,Grégoire Le Provost,Isabelle Lesur,Jérôme Bartholomé,Patricia Faivre-Rampant,Annegret Kohler,Jean-Charles Leplé,Nathalie Chantret,Jun Chen,Anne Dievart,Tina Alaeitabar,Valérie Barbe,Caroline Belser,Hélène Bergès,Catherine Bodénès,Marie-Béatrice Bogeat-Triboulot,Marie-Lara Bouffaud,Benjamin Brachi,Emilie Chancerel,David Cohen,Arnaud Couloux,Corinne Da Silva,Carole Dossat,François Ehrenmann,Christine Gaspin,Jacqueline Grima-Pettenati,Erwan Guichoux,Arnaud Hecker,Sylvie Herrmann,Philippe Hugueney,Irène Hummel,Christophe Klopp,Céline Lalanne,Martin Lascoux,Eric Lasserre,Arnaud Lemainque,Marie-Laure Desprez-Loustau,Isabelle Luyten,Mohammed-Amin Madoui,Sophie Mangenot,Clemence Marchal,Florian Maumus,Jonathan Mercier,Célia Michotey,Olivier Panaud,Nathalie Picault,Nicolas Rouhier,Olivier Rué,Camille Rustenholz,Franck Salin,Marçal Soler,Marçal Soler,Mika T. Tarkka,Amandine Velt,Amy E. Zanne,Francis Martin,Patrick Wincker,Hadi Quesneville,Antoine Kremer,Jérôme Salse +67 more
TL;DR: Through this case study of oak, the accumulation and transmission of somatic mutations and the expansion of disease-resistance gene families in trees are demonstrated.
Journal ArticleDOI
Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges
Anaïs Gouin,Anthony Bretaudeau,Anthony Bretaudeau,Kiwoong Nam,Sylvie Gimenez,Jean-Marc Aury,Bernard Duvic,Frédérique Hilliou,Nicolas Durand,Nicolas Montagné,Isabelle Darboux,Suyog S. Kuwar,Thomas Chertemps,David Siaussat,Anne Bretschneider,Yves Moné,Seung-Joon Ahn,Sabine Hänniger,Anne Sophie Gosselin Grenet,David Neunemann,Florian Maumus,Isabelle Luyten,Karine Labadie,Wei Xu,Fotini Koutroumpa,Jean Michel Escoubas,Angel Llopis,Martine Maïbèche-Coisne,Fanny Salasc,Fanny Salasc,Archana Tomar,Alisha Anderson,Sher Afzal Khan,Pascaline Dumas,Marion Orsucci,Julie Guy,Caroline Belser,Adriana Alberti,Benjamin Noel,Arnaud Couloux,Jonathan Mercier,Sabine Nidelet,Emeric Dubois,Nai-Yong Liu,Isabelle Boulogne,Olivier Mirabeau,Gaëlle Le Goff,Karl H.J. Gordon,John G. Oakeshott,Fernando Luis Cônsoli,Anne-Nathalie Volkoff,Howard W. Fescemyer,James H. Marden,Dawn S. Luthe,Salvador Herrero,David G. Heckel,Patrick Wincker,Patrick Wincker,Gael J. Kergoat,Joelle Amselem,Hadi Quesneville,Astrid T. Groot,Astrid T. Groot,Emmanuelle Jacquin-Joly,Nicolas Nègre,Claire Lemaitre,Fabrice Legeai,Emmanuelle d'Alençon,Philippe Fournier +68 more
TL;DR: Signs of positive selection in genes involved in chemoreception, detoxification and digestion, and copy number variation in the two latter gene families are found, suggesting an adaptive role for structural variation.
Journal ArticleDOI
Genome assembly using Nanopore-guided long and error-free DNA reads
Mohammed-Amin Madoui,Stefan Engelen,Corinne Cruaud,Caroline Belser,Laurie Bertrand,Adriana Alberti,Arnaud Lemainque,Patrick Wincker,Patrick Wincker,Patrick Wincker,Jean-Marc Aury +10 more
TL;DR: The hybrid strategy was able to generate NaS (Nanopore Synthetic-long) reads up to 60 kb that aligned entirely and with no error to the reference genome and that spanned highly conserved repetitive regions, in contrast to an Illumina-only assembly.