C
Chris F. Taylor
Researcher at European Bioinformatics Institute
Publications - 73
Citations - 10046
Chris F. Taylor is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Proteomics Standards Initiative & Ontology (information science). The author has an hindex of 37, co-authored 73 publications receiving 9535 citations. Previous affiliations of Chris F. Taylor include Laboratory of Molecular Biology & Wellcome Trust.
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Journal ArticleDOI
ISA software suite
Philippe Rocca-Serra,Marco Brandizi,Eamonn Maguire,Eamonn Maguire,Nataliya Sklyar,Chris F. Taylor,Kimberly Begley,Dawn Field,Stephen C. Harris,Winston Hide,Oliver Hofmann,Steffen Neumann,Peter Sterk,Weida Tong,Susanna-Assunta Sansone,Susanna-Assunta Sansone +15 more
TL;DR: The first open source software suite for experimentalists and curators that assists in the annotation and local management of experimental metadata from high-throughput studies employing one or a combination of omics and other technologies.
Journal ArticleDOI
The Ontology for Biomedical Investigations
Anita Bandrowski,Ryan R. Brinkman,Mathias Brochhausen,Matthew H. Brush,Bill Bug,Marcus C. Chibucos,Kevin Clancy,Mélanie Courtot,Dirk Derom,Michel Dumontier,Liju Fan,Jennifer Fostel,Gilberto Fragoso,Frank Gibson,Alejandra Gonzalez-Beltran,Melissa A. Haendel,Yongqun He,Mervi Heiskanen,Tina Hernandez-Boussard,Mark Jensen,Yu Lin,Allyson L. Lister,Phillip Lord,James Malone,Elisabetta Manduchi,Monnie McGee,Norman Morrison,James A. Overton,Helen Parkinson,Bjoern Peters,Philippe Rocca-Serra,Alan Ruttenberg,Susanna-Assunta Sansone,Richard H. Scheuermann,Daniel Schober,Barry Smith,Larisa N. Soldatova,Christian J. Stoeckert,Chris F. Taylor,Carlo Torniai,Jessica A. Turner,Randi Vita,Patricia L. Whetzel,Jie Zheng +43 more
TL;DR: The state of OBI and several applications that are using it are described, such as adding semantic expressivity to existing databases, building data entry forms, and enabling interoperability between knowledge resources.
Journal ArticleDOI
A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
Chris F. Taylor,Norman W. Paton,Kevin Garwood,P. Kirby,David Stead,Zhikang Yin,Eric W. Deutsch,Laura Selway,Janet Walker,Isabel Riba-Garcia,Shabaz Mohammed,Michael J. Deery,Julie Howard,Tom Dunkley,Ruedi Aebersold,Douglas B. Kell,Kathryn S. Lilley,Peter Roepstorff,John R. Yates,Andy Brass,Alistair J. P. Brown,Phil Cash,Simon J. Gaskell,Simon J. Hubbard,Stephen G. Oliver +24 more
TL;DR: A UML (unified modeling language) approach to proteomics experimental data is presented, XML and SQL (structured query language) implementations of that model are described, and capture, storage, and dissemination strategies are discussed.
Journal ArticleDOI
The MGED Ontology: a resource for semantics-based description of microarray experiments
Patricia L. Whetzel,Helen Parkinson,Helen C. Causton,Liju Fan,Jennifer Fostel,Gilberto Fragoso,Laurence Game,Mervi Heiskanen,Norman Morrison,Philippe Rocca-Serra,Susanna-Assunta Sansone,Chris F. Taylor,Joseph White,Christian J. Stoeckert +13 more
TL;DR: The MGED Ontology was developed to provide terms for annotating experiments in line with the MIAME guidelines and provides a framework to reference terms in other ontologies and therefore facilitates the use of ontologies in microarray data annotation.
Journal ArticleDOI
Omics Data Sharing
Dawn Field,Susanna-Assunta Sansone,Susanna-Assunta Sansone,Amanda Collis,Timothy F. Booth,Peter Dukes,Susan K. Gregurick,Karen Kennedy,Patrik Kolar,Eugene Kolker,Mary Maxon,Siân Millard,Alexis-Michel Mugabushaka,Nicola Perrin,Jacques E. Remacle,Karin A. Remington,Philippe Rocca-Serra,Chris F. Taylor,Mark Thorley,Bela Tiwari,John Wilbanks +20 more
TL;DR: Data sharing, and the good annotation practices it depends on, must become part of the fabric of daily research for researchers and funders.