C
Christian Carøe
Researcher at University of Copenhagen
Publications - 34
Citations - 1660
Christian Carøe is an academic researcher from University of Copenhagen. The author has contributed to research in topics: Population & Genome. The author has an hindex of 15, co-authored 30 publications receiving 1160 citations. Previous affiliations of Christian Carøe include Natural History Museum & Technical University of Denmark.
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Journal ArticleDOI
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Sarah Siu Tze Mak Mak,Shyam Gopalakrishnan,Christian Carøe,Christian Carøe,Chunyu Geng,Shanlin Liu,Mikkel-Holger S. Sinding,Mikkel-Holger S. Sinding,Mikkel-Holger S. Sinding,Lukas F. K. Kuderna,Wenwei Zhang,Fu Shujin,Filipe G. Vieira,Mietje Germonpré,Hervé Bocherens,Sergey Fedorov,Bent O. Petersen,Thomas Sicheritz-Pontén,Tomas Marques-Bonet,Tomas Marques-Bonet,Guojie Zhang,Hui Jiang,M. Thomas P. Gilbert,M. Thomas P. Gilbert,M. Thomas P. Gilbert +24 more
TL;DR: The observations suggest that the BGISEQ-500 holds the potential to represent a valid and potentially valuable alternative platform for palaeogenomic data generation that is worthy of future exploration by those interested in the sequencing and analysis of degraded DNA.
Journal ArticleDOI
Ancient and modern environmental DNA
Mikkel Winther Pedersen,Søren Overballe-Petersen,Luca Ermini,Clio Der Sarkissian,James Haile,Micaela Hellstrom,Johan Spens,Philip Francis Thomsen,Kristine Bohmann,Enrico Cappellini,Ida Bærholm Schnell,Nathan Wales,Christian Carøe,Paula F. Campos,Astrid M. Z. Schmidt,M. Thomas P. Gilbert,Anders J. Hansen,Ludovic Orlando,Eske Willerslev +18 more
TL;DR: EDNA has revealed an ancient forest in Greenland, extended by several thousand years the survival dates for mainland woolly mammoth in Alaska, and pushed back the dates for spruce survival in Scandinavian ice-free refugia during the last glaciation.
Journal ArticleDOI
Single-tube library preparation for degraded DNA
Christian Carøe,Christian Carøe,Shyam Gopalakrishnan,Lasse Vinner,Sarah S.T. Mak,Mikkel-Holger S. Sinding,José Alfredo Samaniego,Nathan Wales,Thomas Sicheritz-Pontén,M. Thomas P. Gilbert +9 more
TL;DR: Four Illumina library preparation protocols are compared, including two “single‐tube” methods developed for this study with the explicit aim of improving data quality and reducing preparation time and expenses, and single‐tube protocols increase library complexity, yield more reads that map uniquely to the reference genome, reduce processing time, and may decrease laboratory costs by 90%.
Journal ArticleDOI
The origin and evolution of maize in the Southwestern United States.
Rute R. da Fonseca,Bruce D. Smith,Nathan Wales,Enrico Cappellini,Pontus Skoglund,Matteo Fumagalli,José Alfredo Samaniego,Christian Carøe,María C. Ávila-Arcos,María C. Ávila-Arcos,David E. Hufnagel,Thorfinn Sand Korneliussen,Filipe G. Vieira,Filipe G. Vieira,Mattias Jakobsson,Mattias Jakobsson,Bernardo Arriaza,Eske Willerslev,Rasmus Nielsen,Rasmus Nielsen,Matthew B. Hufford,Anders Albrechtsen,Jeffrey Ross-Ibarra,M. Thomas P. Gilbert,M. Thomas P. Gilbert +24 more
TL;DR: It is found that the initial diffusion of maize into the Southwest about 4,000 years ago is likely to have occurred along a highland route, followed by gene flow from a lowland coastal maize beginning at least 2,500 years ago.
Journal ArticleDOI
Interspecific Gene Flow Shaped the Evolution of the Genus Canis.
Shyam Gopalakrishnan,Mikkel-Holger S. Sinding,Jazmín Ramos-Madrigal,Jonas Niemann,José Alfredo Samaniego Castruita,Filipe G. Vieira,Christian Carøe,Marc de Manuel Montero,Lukas F. K. Kuderna,Aitor Serres,Víctor M. González-Basallote,Yan-Hu Liu,Guo-Dong Wang,Tomas Marques-Bonet,Siavash Mirarab,Carlos Fernandes,Philippe Gaubert,Klaus-Peter Koepfli,Klaus-Peter Koepfli,Jane Budd,Eli Knispel Rueness,Claudio Sillero,Claudio Sillero,Mads Peter Heide-Jørgensen,Mads Peter Heide-Jørgensen,Bent O. Petersen,Thomas Sicheritz-Pontén,Lutz Bachmann,Øystein Wiig,Anders J. Hansen,Anders J. Hansen,M. Thomas P. Gilbert,M. Thomas P. Gilbert +32 more
TL;DR: A dataset of 48 resequenced genomes spanning all members of the genus Canis except the black-backed and side-striped jackals, encompassing the global diversity of seven extant canid lineages, finds gene flow between the ancestors of the dhole and African hunting dog and admixture between the gray wolf, coyote, golden jackal, and African golden wolf.