D
Dag Ahrén
Researcher at Lund University
Publications - 56
Citations - 3504
Dag Ahrén is an academic researcher from Lund University. The author has contributed to research in topics: Gene & Monacrosporium. The author has an hindex of 23, co-authored 49 publications receiving 3108 citations. Previous affiliations of Dag Ahrén include European Bioinformatics Institute.
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Journal ArticleDOI
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
Francis Martin,Andrea Aerts,Dag Ahrén,Annick Brun,Etienne Danchin,Frédéric Duchaussoy,Julien Gibon,Annegret Kohler,Erika Lindquist,V. Pereda,Asaf Salamov,Harris Shapiro,Jan Wuyts,Damien Blaudez,Marc Buée,Peter Brokstein,Björn Canbäck,David E. Cohen,Pierre-Emmanuel Courty,Pedro M. Coutinho,Christine Delaruelle,John C. Detter,Aurélie Deveau,Stephen P. DiFazio,Sébastien Duplessis,Laurence Fraissinet-Tachet,E. Lucic,Pascale Frey-Klett,C. Fourrey,Ivo Feussner,Jane Grimwood,Patrik J. Hoegger,Preti Jain,Sreedhar Kilaru,Jessy Labbé,Yao-Cheng Lin,Valérie Legué,F. Le Tacon,Roland Marmeisse,Delphine Melayah,Barbara Montanini,Michael Muratet,Uwe Nehls,Hélène Niculita-Hirzel,M. P. Oudot-Le Secq,Martina Peter,Hadi Quesneville,Balaji Rajashekar,Marlis Reich,Nicolas Rouhier,Jeremy Schmutz,T. Yin,Michel Chalot,Bernard Henrissat,Ursula Kües,Susan Lucas,Y. Van de Peer,Gopi K. Podila,Andrea Polle,Patricia J. Pukkila,Paul G. Richardson,Pierre Rouzé,Ian R. Sanders,Jason E. Stajich,Anders Tunlid,Gerald A. Tuskan,Igor V. Grigoriev +66 more
TL;DR: The predicted gene inventory of the L. bicolor genome points to previously unknown mechanisms of symbiosis operating in biotrophic mycorrhizal fungi, providing an unparalleled opportunity to develop a deeper understanding of the processes by which symbionts interact with plants within their ecosystem to perform vital functions in the carbon and nitrogen cycles that are fundamental to sustainable plant productivity.
Journal ArticleDOI
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
Peter D. Karp,Christos A. Ouzounis,Caroline Moore-Kochlacs,Leon Goldovsky,Pallavi Kaipa,Dag Ahrén,Sophia Tsoka,Nikos Darzentas,Victor Kunin,Nuria Lopez-Bigas +9 more
TL;DR: The computational methodology by which the BioCyc collection has been expanded is discussed, and an aggregate analysis of the collection is presented that includes the range of number of pathways present in these organisms, and the most frequently observed pathways.
Journal ArticleDOI
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
Jason E. Stajich,Jason E. Stajich,Jason E. Stajich,Sarah K. Wilke,Dag Ahrén,Chun Hang Au,Bruce W. Birren,Mark Borodovsky,Claire Burns,Björn Canbäck,Lorna A. Casselton,Chi Keung Cheng,Jixin Deng,Jixin Deng,Fred S. Dietrich,David C. Fargo,David C. Fargo,Mark L. Farman,Allen C. Gathman,Jonathan M. Goldberg,Roderic Guigó,Patrick J. Hoegger,Patrick J. Hoegger,James B. Hooker,Ashleigh Huggins,Timothy Y. James,Takashi Kamada,Sreedhar Kilaru,Sreedhar Kilaru,Chinnapa Kodira,Ursula Kües,Doris M. Kupfer,Hoi Shan Kwan,Alexandre Lomsadze,Weixi Li,Walt W. Lilly,Li-Jun Ma,Aaron J. Mackey,Aaron J. Mackey,Gerard Manning,Francis Martin,Hajime Muraguchi,Donald O. Natvig,Heather J. Palmerini,Marilee A. Ramesh,Cathy J. Rehmeyer,Cathy J. Rehmeyer,Bruce A. Roe,Narmada Shenoy,Mario Stanke,Vardges Ter-Hovhannisyan,Anders Tunlid,Rajesh Velagapudi,Rajesh Velagapudi,Rajesh Velagapudi,Qiandong Zeng,Miriam E. Zolan,Patricia J. Pukkila +57 more
TL;DR: The mushroom Coprinopsis cinerea is a classic experimental model for multicellular development in fungi because it grows on defined media, completes its life cycle in 2 weeks, produces some 108 synchronized meiocytes, and can be manipulated at all stages in development by mutation and transformation.
Journal ArticleDOI
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors
Firoz Shah,César Nicolás,Johan Bentzer,Magnus Ellström,Mark M. Smits,Francois Rineau,Björn Canbäck,Dimitrios Floudas,Dimitrios Floudas,Robert Carleer,Gerald Lackner,Jana Braesel,Dirk Hoffmeister,Bernard Henrissat,Bernard Henrissat,Dag Ahrén,Tomas Johansson,David S. Hibbett,Francis Martin,Per Persson,Anders Tunlid +20 more
TL;DR: It is proposed that the ancestral decay mechanisms used primarily to obtain carbon have been adapted in symbiosis to scavenge nutrients instead.
Journal ArticleDOI
Transcriptional responses of Paxillus involutus and Betula pendula during formation of ectomycorrhizal root tissue.
Tomas Johansson,Antoine Le Quéré,Dag Ahrén,Bengt Söderström,Rickard Erlandsson,Joakim Lundeberg,Mattias Uhlen,Anders Tunlid +7 more
TL;DR: The analyses showed that the plant and fungus responded to the symbiosis by altering the expression levels of a number of enzymes involved in carbon metabolism, including plant and fungal metallothioneins and a plant defensin homologue.