D
Dave Ussery
Researcher at Technical University of Denmark
Publications - 7
Citations - 167
Dave Ussery is an academic researcher from Technical University of Denmark. The author has contributed to research in topics: Genome & Genome evolution. The author has an hindex of 5, co-authored 7 publications receiving 157 citations. Previous affiliations of Dave Ussery include Oak Ridge National Laboratory.
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Journal ArticleDOI
Genome update: the 1000th genome – a cautionary tale
TL;DR: Of the 1000 genomes available, not a single protein is conserved across all genomes, and only a total of four genes are conserved in all bacteria: two protein genes and two RNA genes.
Journal ArticleDOI
Toward a standards-compliant genomic and metagenomic publication record.
George M. Garrity,Dawn Field,Nikos C. Kyrpides,Lynette Hirschman,Susanna-Assunta Sansone,Samuel V. Angiuoli,James R. Cole,Frank Oliver Glöckner,Eugene Kolker,George A. Kowalchuk,Mary Ann Moran,Dave Ussery,Owen White +12 more
TL;DR: It is argued that an "eJournal," published under the Open Access paradigm by the Genomic Standards Consortium, could be an attractive publishing forum for a broader range of standardization initiatives within, and beyond, the GSC and thereby fill an unoccupied yet increasingly important niche within the current research landscape.
Journal ArticleDOI
Genomic Standards Consortium Projects
Dawn Field,Peter Sterk,Renzo Kottmann,J. Wim De Smet,Linda A. Amaral-Zettler,Guy Cochrane,James R. Cole,Neil M Davies,Neil M Davies,Peter Dawyndt,George M. Garrity,Jack A. Gilbert,Jack A. Gilbert,Frank Oliver Glöckner,Lynette Hirschman,Hans-Peter Klenk,Rob Knight,Nikos C. Kyrpides,Folker Meyer,Folker Meyer,Ilene Karsch-Mizrachi,Norman Morrison,Robert J. Robbins,Inigo San Gil,Susanna Sansone,Lynn M. Schriml,Tatiana Tatusova,Dave Ussery,Pelin Yilmaz,Owen White,John Wooley,Gregory J Caporaso +31 more
TL;DR: The recently enacted policy for proposing new activities that are intended to be taken on by the GSC, along with the template for proposing such new activities, are described.
Journal ArticleDOI
Hyperstructures, Genome Analysis and I-Cells
Patrick Amar,Patrick Amar,Pascal Ballet,Georgia Barlovatz-Meimon,Arndt Benecke,Gilles Bernot,Yves Bouligand,Paul Bourguine,Franck Delaplace,Jean-Marc Delosme,Maurice Demarty,Itzhak Fishov,Jean Fourmentin-Guilbert,Joe Fralick,Jean-Louis Giavitto,Bernard Gleyse,Christophe Godin,Roberto Incitti,François Képès,Catherine Lange,Lois Le Sceller,Corinne Loutellier,Olivier Michel,Franck Molina,Chantal Monnier,René Natowicz,Vic Norris,Nicole Orange,Helene Pollard,Derek Raine,Camille Ripoll,Josette Rouviere-Yaniv,Milton H. Saier,Paul Soler,Pierre Tambourin,Michel Thellier,Philippe Tracqui,Dave Ussery,Jean-Claude Vincent,Jean-Pierre Vannier,Philippa M. Wiggins,Abdallah Zemirline +41 more
TL;DR: How a variety of in silico approaches involving cellular automata and multi-agent systems could be combined to develop new concepts in the form of an Integrated cell (I-cell) which would undergo selection for growth and survival in a world of artificial microbiology is speculated on.
Journal ArticleDOI
Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792.
Iliana Espinoza-Valles,Gary J. Vora,Baochuan Lin,Pimlapas Leekitcharoenphon,Adrián González-Castillo,Dave Ussery,Dave Ussery,Lone Høj,Bruno Gomez-Gil +8 more
TL;DR: Two blastp atlases were created to identify unique regions among the genomes most related to V. harveyi CAIM 1792, reported to be involved in virulence, metabolism, quorum sensing and motility.