D
David Bujold
Researcher at McGill University
Publications - 15
Citations - 2004
David Bujold is an academic researcher from McGill University. The author has contributed to research in topics: Data sharing & Epigenomics. The author has an hindex of 7, co-authored 13 publications receiving 1436 citations.
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Journal ArticleDOI
The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease
William J. Astle,Heather Elding,Heather Elding,Tao Jiang,Dave Allen,Dace Ruklisa,Dace Ruklisa,Alice L. Mann,Daniel Mead,Heleen J. Bouman,Fernando Riveros-Mckay,Myrto Kostadima,Myrto Kostadima,Myrto Kostadima,John J. Lambourne,John J. Lambourne,Suthesh Sivapalaratnam,Suthesh Sivapalaratnam,Kate Downes,Kate Downes,Kousik Kundu,Kousik Kundu,Lorenzo Bomba,Kim Berentsen,John Bradley,John Bradley,Louise C. Daugherty,Louise C. Daugherty,Olivier Delaneau,Kathleen Freson,Stephen F. Garner,Stephen F. Garner,Luigi Grassi,Luigi Grassi,Jose A. Guerrero,Jose A. Guerrero,Matthias Haimel,Eva M. Janssen-Megens,Anita Kaan,Mihir A Kamat,Bowon Kim,Amit Mandoli,Jonathan Marchini,Jonathan Marchini,Joost H.A. Martens,Stuart Meacham,Stuart Meacham,Karyn Megy,Karyn Megy,Jared O'Connell,Jared O'Connell,Romina Petersen,Romina Petersen,Nilofar Sharifi,S.M. Sheard,James R Staley,Salih Tuna,Martijn van der Ent,Klaudia Walter,Shuang-Yin Wang,Eleanor Wheeler,Steven P. Wilder,Valentina Iotchkova,Valentina Iotchkova,Carmel Moore,Jennifer G. Sambrook,Jennifer G. Sambrook,Hendrik G. Stunnenberg,Emanuele Di Angelantonio,Emanuele Di Angelantonio,Emanuele Di Angelantonio,Stephen Kaptoge,Stephen Kaptoge,Taco W. Kuijpers,Enrique Carrillo-de-Santa-Pau,David Juan,Daniel Rico,Alfonso Valencia,Lu Chen,Lu Chen,Bing Ge,Louella Vasquez,Tony Kwan,Diego Garrido-Martín,Stephen Watt,Ying Yang,Roderic Guigó,Stephan Beck,Dirk S. Paul,Dirk S. Paul,Tomi Pastinen,David Bujold,Guillaume Bourque,Mattia Frontini,Mattia Frontini,Mattia Frontini,John Danesh,David J. Roberts,David J. Roberts,Willem H. Ouwehand,Adam S. Butterworth,Adam S. Butterworth,Adam S. Butterworth,Nicole Soranzo +103 more
TL;DR: A genome-wide association analysis in the UK Biobank and INTERVAL studies is performed, providing evidence of shared genetic pathways linking blood cell indices with complex pathologies, including autoimmune diseases, schizophrenia, and coronary heart disease and evidence suggesting previously reported population associations betweenBlood cell indices and cardiovascular disease may be non-causal.
Journal ArticleDOI
Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells
Lu Chen,Lu Chen,Bing Ge,Francesco Paolo Casale,Louella Vasquez,Tony Kwan,Diego Garrido-Martín,Stephen Watt,Ying Yan,Kousik Kundu,Kousik Kundu,Simone Ecker,Avik Datta,David J. Richardson,Frances Burden,Frances Burden,Daniel Mead,Alice L. Mann,José M. Fernández,Sophia Rowlston,Sophia Rowlston,Steven P. Wilder,Samantha Farrow,Samantha Farrow,Xiaojian Shao,John J. Lambourne,Adriana Redensek,Cornelis A. Albers,Vyacheslav Amstislavskiy,Sofie Ashford,Sofie Ashford,Kim Berentsen,Lorenzo Bomba,Guillaume Bourque,David Bujold,Stephan Busche,Maxime Caron,Shu-Huang Chen,Warren A. Cheung,Oliver Delaneau,Emmanouil T. Dermitzakis,Heather Elding,Irina Colgiu,Frederik Otzen Bagger,Frederik Otzen Bagger,Frederik Otzen Bagger,Paul Flicek,Ehsan Habibi,Valentina Iotchkova,Valentina Iotchkova,Eva M. Janssen-Megens,Bowon Kim,Hans Lehrach,Ernesto Lowy,Amit Mandoli,Filomena Matarese,Matthew T. Maurano,John A. Morris,Vera Pancaldi,Farzin Pourfarzad,Karola Rehnström,Karola Rehnström,Augusto Rendon,Thomas Risch,Nilofar Sharifi,Marie-Michelle Simon,Marc Sultan,Alfonso Valencia,Klaudia Walter,Shuang-Yin Wang,Mattia Frontini,Mattia Frontini,Mattia Frontini,Stylianos E. Antonarakis,Laura Clarke,Marie-Laure Yaspo,Stephan Beck,Roderic Guigó,Daniel Rico,Joost H.A. Martens,Willem H. Ouwehand,Taco W. Kuijpers,Taco W. Kuijpers,Dirk S. Paul,Dirk S. Paul,Hendrik G. Stunnenberg,Oliver Stegle,Kate Downes,Kate Downes,Tomi Pastinen,Nicole Soranzo +90 more
TL;DR: High-resolution genetic, epigenetic, and transcriptomic profiling in three major human immune cell types from up to 197 individuals yields insights into cell-type-specific correlation between diverse genomic inputs, more generalizable correlations between these inputs, and defines molecular events that may underpin complex disease risk.
Journal ArticleDOI
The International Human Epigenome Consortium Data Portal
David Bujold,David Anderson de Lima Morais,Carol Gauthier,Catherine Côté,Maxime Caron,Tony Kwan,Kuang Chung Chen,Jonathan Laperle,Alexei Nordell Markovits,Tomi Pastinen,B. Caron,Alain Veilleux,Pierre-Étienne Jacques,Guillaume Bourque +13 more
TL;DR: The IHEC Data portals represents a strategy for unifying the distributed data produced by international research consortia and enhances the utility of these reference maps by facilitating the discovery, visualization, analysis, download and sharing of epigenomics data.
Journal ArticleDOI
Increased DNA methylation variability in type 1 diabetes across three immune effector cell types
Dirk S. Paul,Dirk S. Paul,Andrew E. Teschendorff,Andrew E. Teschendorff,Mary A N Dang,Robert Lowe,Mohammed I. Hawa,Simone Ecker,Huriya Beyan,Stephanie Cunningham,Alexandra Fouts,Anita Ramelius,Frances Burden,Samantha Farrow,Sophia Rowlston,Karola Rehnström,Mattia Frontini,Kate Downes,Stephan Busche,Warren A. Cheung,Bing Ge,Marie Michelle Simon,David Bujold,Tony Kwan,Guillaume Bourque,Avik Datta,Ernesto Lowy,Laura Clarke,Paul Flicek,Emanuele Libertini,Simon Heath,Marta Gut,Ivo Gut,Willem H. Ouwehand,Tomi Pastinen,Nicole Soranzo,Nicole Soranzo,Sabine E. Hofer,Beate Karges,Thomas Meissner,Bernhard O. Boehm,Bernhard O. Boehm,Bernhard O. Boehm,Corrado M. Cilio,Helena Elding Larsson,Åke Lernmark,Andrea K. Steck,Vardhman K. Rakyan,Stephan Beck,R. David Leslie +49 more
TL;DR: An epigenome-wide association study across 406,365 CpGs in 52 monozygotic twin pairs discordant for type 1 diabetes in three immune effector cell types implicate epigenetic changes that could contribute to disease pathogenesis in T1D.
Journal ArticleDOI
GenPipes: an open-source framework for distributed and scalable genomic analyses
Mathieu Bourgey,Rola Dali,Robert Eveleigh,Kuang Chung Chen,Louis Letourneau,Joel Fillon,Marc Michaud,Maxime Caron,Johanna Sandoval,Francois Lefebvre,Gary Leveque,Eloi Mercier,David Bujold,Pascale Marquis,Patrick Tran Van,David Anderson de Lima Morais,Julien Tremblay,Xiaojian Shao,Edouard Henrion,Emmanuel Gonzalez,Pierre-Olivier Quirion,B. Caron,Guillaume Bourque +22 more
TL;DR: GenPipes is a flexible Python-based framework that facilitates the development and deployment of multi-step workflows optimized for high-performance computing clusters and the cloud, and offers genomics researchers a simple method to analyze different types of data.