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Emilio Palumbo
Researcher at Pompeu Fabra University
Publications - 27
Citations - 2691
Emilio Palumbo is an academic researcher from Pompeu Fabra University. The author has contributed to research in topics: Gene & Medicine. The author has an hindex of 11, co-authored 24 publications receiving 1706 citations.
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Journal ArticleDOI
Nextflow enables reproducible computational workflows
Paolo Di Tommaso,Maria Chatzou,Evan Floden,Pablo Prieto Barja,Emilio Palumbo,Cedric Notredame +5 more
TL;DR: The utility of Toil is demonstrated by creating one of the single largest, consistently analyzed, public human RNA-seq expression repositories, which the community will find useful.
Journal ArticleDOI
Transcriptional diversity during lineage commitment of human blood progenitors
Lu Chen,Lu Chen,Lu Chen,Myrto Kostadima,Myrto Kostadima,Myrto Kostadima,Joost H.A. Martens,Giovanni Canu,Giovanni Canu,Sara P. Garcia,Sara P. Garcia,Ernest Turro,Ernest Turro,Kate Downes,Kate Downes,Iain C. Macaulay,Ewa Bielczyk-Maczyńska,Ewa Bielczyk-Maczyńska,Sophia Coe,Sophia Coe,Samantha Farrow,Samantha Farrow,Pawan Poudel,Pawan Poudel,Frances Burden,Frances Burden,Sjoert B. G. Jansen,Sjoert B. G. Jansen,William J. Astle,William J. Astle,Antony P. Attwood,Antony P. Attwood,Tadbir K. Bariana,Bernard de Bono,Bernard de Bono,Alessandra Breschi,John C. Chambers,John C. Chambers,Fizzah A. Choudry,Fizzah A. Choudry,Laura Clarke,Paul Coupland,Martijn van der Ent,Wendy N. Erber,Joop H. Jansen,Rémi Favier,Matthew Fenech,Nicola Foad,Nicola Foad,Kathleen Freson,Chris Van Geet,Keith Gomez,Roderic Guigó,Daniel Hampshire,Daniel Hampshire,Anne M. Kelly,Anne M. Kelly,Anne M. Kelly,Hindrik H. D. Kerstens,Jaspal S. Kooner,Jaspal S. Kooner,Michael Laffan,Claire Lentaigne,Charlotte Labalette,Charlotte Labalette,Tiphaine Martin,Tiphaine Martin,Tiphaine Martin,Stuart Meacham,Stuart Meacham,Andrew D Mumford,Sylvia T. Nurnberg,Sylvia T. Nurnberg,Emilio Palumbo,Bert A. van der Reijden,David J. Richardson,Stephen John Sammut,Greg Slodkowicz,Asif U. Tamuri,Louella Vasquez,Katrin Voss,Katrin Voss,Stephen Watt,Sarah K Westbury,Paul Flicek,Paul Flicek,Remco Loos,Nick Goldman,Paul Bertone,Paul Bertone,Randy J. Read,Sylvia Richardson,Ana Cvejic,Ana Cvejic,Nicole Soranzo,Nicole Soranzo,Willem H. Ouwehand,Willem H. Ouwehand,Willem H. Ouwehand,Hendrik G. Stunnenberg,Mattia Frontini,Mattia Frontini,Augusto Rendon,Augusto Rendon +103 more
TL;DR: A previously undetected layer of regulation affecting cell fating is unveiled, which involves transcriptional isoforms switching without noticeable changes at the gene level and resulting in the gain or loss of protein functions in blood cells involved in the immune system.
Journal ArticleDOI
LncATLAS database for subcellular localization of long noncoding RNAs.
TL;DR: Relative concentration index (RCI) is introduced as a useful measure of localization derived from ensemble RNA-seq measurements, and is presented across cell types and organelles, and may be compared to the distribution of all other genes.
Supplementary resources_Transcriptional diversity during lineage commitment of human blood progenitors
Lu Chen,Myrto Kostadima,Joost H.A. Martens,Giovanni Canu,Sara P. Garcia,Ernest Turro,Kate Downes,Iain C. Macaulay,E. Bielczyk Maczynska,S. Coe,Samantha Farrow,Pawan Poudel,Frances Burden,Sjoert B. G. Jansen,William J. Astle,Antony P. Attwood,Tadbir K. Bariana,B. de Bono,Alessandra Breschi,John C. Chambers,Fizzah A. Choudry,Laura Clarke,Paul Coupland,M. van der Ent,Wendy N. Erber,Joop H. Jansen,Rémi Favier,Matthew Fenech,Nicola Foad,Kathleen Freson,C. van Geet,Keith Gomez,Roderic Guigó,D. Hampshire,Anne M. Kelly,Hindrik H. D. Kerstens,Jaspal S. Kooner,Michael Laffan,Claire Lentaigne,Charlotte Labalette,Tiphaine Martin,Stuart Meacham,Andrew D Mumford,Sylvia T. Nurnberg,Emilio Palumbo,B. A. van der Reijden,David J. Richardson,Stephen John Sammut,Greg Slodkowicz,Asif U. Tamuri,Louella Vasquez,Katrin Voss,Stephen Watt,Sarah K Westbury,Paul Flicek,Remco Loos,Nick Goldman,P. Bertone,Randy J. Read,Sylvia Richardson,Ana Cvejic,Nicole Soranzo,Willem H. Ouwehand,Hendrik G. Stunnenberg,Mattia Frontini,Augusto Rendon +65 more
Journal ArticleDOI
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
Renée Beekman,Vicente Chapaprieta,Nuria Russiñol,Roser Vilarrasa-Blasi,Núria Verdaguer-Dot,Joost H.A. Martens,Martí Duran-Ferrer,Marta Kulis,François Serra,Biola M. Javierre,Steven W. Wingett,Guillem Clot,Ana C. Queirós,Giancarlo Castellano,Julie Blanc,Marta Gut,Angelika Merkel,Simon Heath,Anna Vlasova,Sebastian Ullrich,Emilio Palumbo,Anna Enjuanes,David Martín-García,Sílvia Beà,Magda Pinyol,Marta Aymerich,Romina Royo,Montserrat Puiggròs,David Torrents,David Torrents,Avik Datta,Ernesto Lowy,Myrto Kostadima,Maša Roller,Laura Clarke,Paul Flicek,Xabier Agirre,Xabier Agirre,Felipe Prosper,Felipe Prosper,Tycho Baumann,Julio Delgado,Armando López-Guillermo,Peter Fraser,Peter Fraser,Marie-Laure Yaspo,Roderic Guigó,Reiner Siebert,Marc A. Marti-Renom,Xose S. Puente,Xose S. Puente,Carlos López-Otín,Carlos López-Otín,Ivo Gut,Hendrik G. Stunnenberg,Elias Campo,José I. Martín-Subero +56 more
TL;DR: This study provides an integrative portrait of the CLL epigenome, identifies extensive networks of altered regulatory elements and sheds light on the relationship between the genetic and epigenetic architecture of the disease.