F
Frances Wong
Researcher at University of Dundee
Publications - 6
Citations - 97
Frances Wong is an academic researcher from University of Dundee. The author has contributed to research in topics: Computer science & Medicine. The author has an hindex of 3, co-authored 4 publications receiving 24 citations.
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Journal ArticleDOI
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.
Ugis Sarkans,Wah Chiu,Lucy M. Collinson,Michele C. Darrow,Jan Ellenberg,David Grunwald,Jean-Karim Hériché,Andrii Iudin,Gabriel G. Martins,Terry Meehan,Kedar Narayan,Ardan Patwardhan,Matthew R. G. Russell,Helen R. Saibil,Caterina Strambio-De-Castillia,Jason R. Swedlow,Christian Tischer,Virginie Uhlmann,Paul Verkade,Mary Barlow,Omer Ali Bayraktar,Ewan Birney,Cesare Catavitello,Christopher Cawthorne,Stephan Wagner-Conrad,Elizabeth Duke,Perrine Paul-Gilloteaux,Emmanuel Gustin,Maria Harkiolaki,Pasi Kankaanpää,Thomas Lemberger,Jo McEntyre,Josh Moore,Andrew W. Nicholls,Shuichi Onami,Helen Parkinson,Maddy Parsons,M. Romanchikova,Nicholas James Sofroniew,Jim Swoger,Nadine Utz,Lenard M. Voortman,Frances Wong,Peijun Zhang,Gerard J. Kleywegt,Alvis Brazma +45 more
TL;DR: In this paper, the authors propose metadata guidelines to address the needs of diverse communities within light and electron microscopy within microscopy, and the proposed Recommended Metadata for Biological Images (REMBI) will stimulate discussions about their implementation and future extension.
Book ChapterDOI
Bringing Open Data to Whole Slide Imaging.
Sébastien Besson,Roger Leigh,Melissa Linkert,Chris Allan,Jean-Marie Burel,Mark Carroll,David Gault,Riad Gozim,Simon Li,Dominik Lindner,Josh Moore,William J. Moore,Petr Walczysko,Frances Wong,Jason R. Swedlow +14 more
TL;DR: The team has extended a long-standing community file format (OME-TIFF) for use in digital pathology by making use of the core TIFF specification to store multi-resolution representations of a single slide in a flexible, performant manner.
Journal ArticleDOI
MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community.
Posted ContentDOI
OME-Zarr: a cloud-optimized bioimaging file format with international community support
Josh Moore,Daniela Basurto-Lozada,Sébastien Besson,John A. Bogovic,Jackson M. Brown,Jean-Marie Burel,Gustavo de Medeiros,Erin Diel,David Gault,Satrajit S. Ghosh,Ilan Gold,Yaroslav O. Halchenko,M. Hartley,Dave Horsfall,Mark Keller,Mark Kittisopikul,Gabor Kovacs,Aybuke Kupce Yoldas,Albane le Tournoulx de la Villegeorges,Tong Li,Prisca Liberali,Melissa Linkert,Dominik Lindner,Joel Lüthi,Jeremy Maitin-Shepard,Trevor Manz,Matthew Mccormick,Khaled Mohamed,William J. Moore,Bugra Özdemir,Constantin Pape,Lucas Pelkmans,M. Julieta Del Prete,Tobias Pietzsch,Stephan Preibisch,Norman Rzepka,David R. Stirling,Jonathan Striebel,Christian Tischer,Daniel M. Toloudis,Petr Walczysko,Alan M. Watson,Frances Wong,Kevin A. Yamauchi,Omer Ali Bayraktar,Muzlifah Haniffa,Stephan Saalfeld,Jason R. Swedlow +47 more
TL;DR: A growing community is constructing a next-generation file format (NGFF) for bioimaging to overcome problems of scalability and heterogeneity as mentioned in this paper , and the Open Microscopy Environment (OME) has designed a format specification process to address these needs.
Posted Content
OMERO.mde in a use case for microscopy metadata harmonization: Facilitating FAIR principles in practical application with metadata annotation tools.
TL;DR: MDEmic as discussed by the authors is a tool for editing metadata of microscopic imaging data in an easy and comfortable way that provides high flexibility in terms of adjustment of metadata sets, which is one of the major goals of FAIR principles.