H
Hideki Nagasaki
Researcher at National Institute of Genetics
Publications - 27
Citations - 2282
Hideki Nagasaki is an academic researcher from National Institute of Genetics. The author has contributed to research in topics: Genome & Whole genome sequencing. The author has an hindex of 16, co-authored 27 publications receiving 1650 citations.
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Journal ArticleDOI
Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome
John L. Bowman,Takayuki Kohchi,Katsuyuki T. Yamato,Jerry Jenkins,Shengqiang Shu,Kimitsune Ishizaki,Shohei Yamaoka,Ryuichi Nishihama,Yasukazu Nakamura,Frédéric Berger,Catherine Adam,Shiori S Aki,Felix Althoff,Takashi Araki,Mario A. Arteaga-Vazquez,Sureshkumar Balasubrmanian,Kerrie Barry,Diane Bauer,Christian R. Boehm,Liam N. Briginshaw,Juan Caballero-Pérez,Bruno Catarino,Feng Chen,Shota Chiyoda,Mansi Chovatia,Kevin M. Davies,Mihails Delmans,Taku Demura,Tom Dierschke,Tom Dierschke,Liam Dolan,Ana E. Dorantes-Acosta,D. Magnus Eklund,D. Magnus Eklund,Stevie N. Florent,Eduardo Flores-Sandoval,Asao Fujiyama,Hideya Fukuzawa,Bence Galik,Daniel Grimanelli,Jane Grimwood,Ueli Grossniklaus,Takahiro Hamada,Jim Haseloff,Alexander J. Hetherington,Asuka Higo,Yuki Hirakawa,Yuki Hirakawa,Hope Hundley,Yoko Ikeda,Keisuke Inoue,Shin-ichiro Inoue,Sakiko Ishida,Qidong Jia,Mitsuru Kakita,Takehiko Kanazawa,Takehiko Kanazawa,Yosuke Kawai,Tomokazu Kawashima,Tomokazu Kawashima,Megan Kennedy,Keita Kinose,Toshinori Kinoshita,Yuji Kohara,Eri Koide,Kenji Komatsu,Sarah Kopischke,Minoru Kubo,Junko Kyozuka,Ulf Lagercrantz,Shih-Shun Lin,Erika Lindquist,Anna Lipzen,Chia-Wei Lu,Efraín De Luna,Robert A. Martienssen,Naoki Minamino,Naoki Minamino,Masaharu Mizutani,Miya Mizutani,Nobuyoshi Mochizuki,Isabel Monte,Rebecca A. Mosher,Hideki Nagasaki,Hirofumi Nakagami,Satoshi Naramoto,Kazuhiko Nishitani,Misato Ohtani,Takashi Okamoto,Masaki Okumura,Jeremy Phillips,Bernardo Pollak,Anke Reinders,Moritz Rövekamp,Ryosuke Sano,Shinichiro Sawa,Marc W. Schmid,Makoto Shirakawa,Roberto Solano,Alexander Spunde,Noriyuki Suetsugu,Sumio Sugano,Akifumi Sugiyama,Rui Sun,Yutaka Suzuki,Mizuki Takenaka,Daisuke Takezawa,Hirokazu Tomogane,Masayuki Tsuzuki,Takashi Ueda,Masaaki Umeda,John M. Ward,Yuichiro Watanabe,Kazufumi Yazaki,Ryusuke Yokoyama,Yoshihiro Yoshitake,Izumi Yotsui,Sabine Zachgo,Jeremy Schmutz +118 more
TL;DR: Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant.
Journal ArticleDOI
Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms.
Toshio Yamamoto,Hideki Nagasaki,Jun-ichi Yonemaru,Kaworu Ebana,Maiko Nakajima,Taeko Shibaya,Masahiro Yano +6 more
TL;DR: Detection of genome-wide SNPs by both high-throughput sequencer and typing array made it possible to evaluate genomic composition of genetically related rice varieties and clarified the dynamics of chromosome recombination during the historical rice breeding process.
Insights into land plant evolution garnered from the Marchantia polymorpha genome, supplementary material
John L. Bowman,Takayuki Kohchi,Katsuyuki T. Yamato,Jerry Jenkins,Shengqiang Shu,Kimitsune Ishizaki,Shohei Yamaoka,Ryuichi Nishihama,Yasukazu Nakamura,Fred Berger,Catherine Adam,Shiori S Aki,Felix Althoff,Takashi Araki,Mario A. Arteaga-Vazquez,Sureshkumar Balasubrmanian,Kerrie Barry,Diane Bauer,Christian R. Boehm,Liam N. Briginshaw,Bruno Catarino,Feng Chen,Shota Chiyoda,Mansi Chovatia,Kevin M. Davies,null null,Taku Demura,Tom Dierschke,Liam Dolan,Ana E. Dorantes-Acosta,D. Magnus Eklund,Stevie N. Florent,Eduardo Flores-Sandoval,Asao Fujiyama,Hideya Fukuzawa,Bence Galik,Daniel Grimanelli,Jane Grimwood,Ueli Grossniklaus,Takahiro Hamada,Jim Haseloff,Alexander J. Hetherington,Asuka Higo,Yuki Hirakawa,Hope Hundley,Yoko Ikeda,Keisuke Inoue,Shin-ichiro Inoue,Sakiko Ishida,Qidong Jia,Mitsuru Kakita,Takehiko Kanazawa,Yosuke Kawai,Tomo Kawashima,Megan Kennedy,Keita Kinose,Toshinori Kinoshita,Yuji Kohara,Eri Koide,Kenji Komatsu,Minoru Kubo,Junko Kyozuka,Ulf Lagercrantz,Shih-Shun Lin,Erika Lindquist,Anna Lipzen,Robert A. Martienssen,Naoki Minamino,Masaharu Mizutani,Miya Mizutani,Nobuyoshi Mochizuki,Isabel Monte,Rebecca A. Mosher,Hideki Nagasaki,Hirofumi Nakagami,Satoshi Naramoto,Kazuhiko Nishitani,Misato Ohtani,Takashi Okamoto,Masaki Okumura,Jeremy Phillips,Bernardo Pollak,Anke Reinders,Moritz Rövekamp,Ryosuke Sano,Shinichiro Sawa,Makoto Shirakawa,Roberto Solano,Alexander Spunde,Noriyuki Suetsugu,Sumio Sugano,Akifumi Sugiyama,Rui Sun,Yutaka Suzuki,Mizuki Takenaka,Daisuke Takezawa,Hirokazu Tomogane,Masayuki Tsuzuki,Takashi Ueda,Masaaki Umeda,John M. Ward,Yuichiro Watanabe,Kazufumi Yazaki,Ryusuke Yokoyama,Yoshihiro Yoshitake,Izumi Yotsui,Sabine Zachgo,Jeremy Schmutz +107 more
Journal ArticleDOI
RiceGAAS: an automated annotation system and database for rice genome sequence
Katsumi Sakata,Yoshiaki Nagamura,Hisataka Numa,Baltazar A. Antonio,Hideki Nagasaki,Atsuko Idonuma,Wakako Watanabe,Yuji Shimizu,Ikuo Horiuchi,Takashi Matsumoto,Takuji Sasaki,Kenichi Higo +11 more
TL;DR: A new automated annotation system and database called Rice Genome Automated Annotation System (RiceGAAS) has been developed to execute a reliable and up-to-date analysis of the genome sequence as well as to store and retrieve the results of annotation.
Journal ArticleDOI
Discovery of Genome-Wide DNA Polymorphisms in a Landrace Cultivar of Japonica Rice by Whole-Genome Sequencing
Yuko Arai-Kichise,Yuh Shiwa,Hideki Nagasaki,Kaworu Ebana,Hirofumi Yoshikawa,Masahiro Yano,Kyo Wakasa +6 more
TL;DR: This work performed whole-genome sequencing of a landrace of japonica rice, Omachi, which is used for sake brewing and is an important source for modern cultivars and validated InDels on a part of chromosome 2 as DNA markers and successfully genotyped five japonicas rice cultivars.