Open AccessDOI
Insights into land plant evolution garnered from the Marchantia polymorpha genome, supplementary material
John L. Bowman,Takayuki Kohchi,Katsuyuki T. Yamato,Jerry Jenkins,Shengqiang Shu,Kimitsune Ishizaki,Shohei Yamaoka,Ryuichi Nishihama,Yasukazu Nakamura,Fred Berger,Catherine Adam,Shiori S Aki,Felix Althoff,Takashi Araki,Mario A. Arteaga-Vazquez,Sureshkumar Balasubrmanian,Kerrie Barry,Diane Bauer,Christian R. Boehm,Liam N. Briginshaw,Bruno Catarino,Feng Chen,Shota Chiyoda,Mansi Chovatia,Kevin M. Davies,null null,Taku Demura,Tom Dierschke,Liam Dolan,Ana E. Dorantes-Acosta,D. Magnus Eklund,Stevie N. Florent,Eduardo Flores-Sandoval,Asao Fujiyama,Hideya Fukuzawa,Bence Galik,Daniel Grimanelli,Jane Grimwood,Ueli Grossniklaus,Takahiro Hamada,Jim Haseloff,Alexander J. Hetherington,Asuka Higo,Yuki Hirakawa,Hope Hundley,Yoko Ikeda,Keisuke Inoue,Shin-ichiro Inoue,Sakiko Ishida,Qidong Jia,Mitsuru Kakita,Takehiko Kanazawa,Yosuke Kawai,Tomo Kawashima,Megan Kennedy,Keita Kinose,Toshinori Kinoshita,Yuji Kohara,Eri Koide,Kenji Komatsu,Minoru Kubo,Junko Kyozuka,Ulf Lagercrantz,Shih-Shun Lin,Erika Lindquist,Anna Lipzen,Robert A. Martienssen,Naoki Minamino,Masaharu Mizutani,Miya Mizutani,Nobuyoshi Mochizuki,Isabel Monte,Rebecca A. Mosher,Hideki Nagasaki,Hirofumi Nakagami,Satoshi Naramoto,Kazuhiko Nishitani,Misato Ohtani,Takashi Okamoto,Masaki Okumura,Jeremy Phillips,Bernardo Pollak,Anke Reinders,Moritz Rövekamp,Ryosuke Sano,Shinichiro Sawa,Makoto Shirakawa,Roberto Solano,Alexander Spunde,Noriyuki Suetsugu,Sumio Sugano,Akifumi Sugiyama,Rui Sun,Yutaka Suzuki,Mizuki Takenaka,Daisuke Takezawa,Hirokazu Tomogane,Masayuki Tsuzuki,Takashi Ueda,Masaaki Umeda,John M. Ward,Yuichiro Watanabe,Kazufumi Yazaki,Ryusuke Yokoyama,Yoshihiro Yoshitake,Izumi Yotsui,Sabine Zachgo,Jeremy Schmutz +107 more
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The article was published on 2017-10-09 and is currently open access. It has received 198 citations till now. The article focuses on the topics: Marchantia polymorpha & Marchantiales.read more
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Journal ArticleDOI
The hornwort genome and early land plant evolution
Jian Zhang,Xin Xing Fu,Rui Qi Li,Xiang Zhao,Yang Liu,Ming He Li,Arthur Zwaenepoel,Hong Ma,Bernard Goffinet,Yan Long Guan,Jia Yu Xue,Yi Ying Liao,Qing-Feng Wang,Qing‐Hua Wang,Jie Yu Wang,Jie Yu Wang,Guo-Qiang Zhang,Zhi Wen Wang,Yu Jia,Mei Zhi Wang,Shan-Shan Dong,Jian Fen Yang,Yuannian Jiao,Ya-Long Guo,Hongzhi Kong,An Ming Lu,Huanming Yang,Shou Zhou Zhang,Yves Van de Peer,Zhong-Jian Liu,Zhong-Jian Liu,Zhi-Duan Chen +31 more
TL;DR: A draft genome sequence of the hornwort Anthoceros augustus confirms the phylogenetic relationships among the three clades of bryophytes and provides insight into the unique characteristics of hornworts and their adaptations to live on land.
Journal ArticleDOI
The Moss Physcomitrium (Physcomitrella) patens: A Model Organism for Non-Seed Plants
TL;DR: A number of technological advances have recently opened the door to forward genetics as well as extremely efficient and precise genome editing in P. patens, and areas where this moss has had the most impact on plant biology are described.
Journal ArticleDOI
An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages.
Guru V. Radhakrishnan,Jean Keller,Mélanie K. Rich,Tatiana Vernié,Duchesse Lacour Mbadinga Mbadinga,Nicolas Vigneron,Ludovic Cottret,Hélène San Clemente,Cyril Libourel,Jitender Cheema,Anna-Malin Linde,D. Magnus Eklund,Shifeng Cheng,Gane Ka-Shu Wong,Ulf Lagercrantz,Fay-Wei Li,Fay-Wei Li,Giles E. D. Oldroyd,Giles E. D. Oldroyd,Pierre-Marc Delaux +19 more
TL;DR: An extensive phylogenomics study based on hundreds of genomes and transcriptomes provides a new interpretation of the evolution of different types of symbiotic associations in land plants, and reveals a conserved ancestral symbiosis pathway.
Journal ArticleDOI
Plant evolution driven by interactions with symbiotic and pathogenic microbes
TL;DR: How insights from a range of plant and algal genomes reveal sustained use through evolution of ancient gene modules as well as emergence of lineage-specific specializations is reviewed.
Journal ArticleDOI
Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae
Per K.I. Wilhelmsson,Cornelia Mühlich,Kristian K. Ullrich,Stefan A. Rensing,Stefan A. Rensing +4 more
TL;DR: It is found that many TAP families previously thought to be specific for land plants actually evolved in streptophyte (charophyte) algae, and thus probably evolved concomitant with the water-to-land-transition.
References
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Journal ArticleDOI
The hornwort genome and early land plant evolution
Jian Zhang,Xin Xing Fu,Rui Qi Li,Xiang Zhao,Yang Liu,Ming He Li,Arthur Zwaenepoel,Hong Ma,Bernard Goffinet,Yan Long Guan,Jia Yu Xue,Yi Ying Liao,Qing-Feng Wang,Qing‐Hua Wang,Jie Yu Wang,Jie Yu Wang,Guo-Qiang Zhang,Zhi Wen Wang,Yu Jia,Mei Zhi Wang,Shan-Shan Dong,Jian Fen Yang,Yuannian Jiao,Ya-Long Guo,Hongzhi Kong,An Ming Lu,Huanming Yang,Shou Zhou Zhang,Yves Van de Peer,Zhong-Jian Liu,Zhong-Jian Liu,Zhi-Duan Chen +31 more
TL;DR: A draft genome sequence of the hornwort Anthoceros augustus confirms the phylogenetic relationships among the three clades of bryophytes and provides insight into the unique characteristics of hornworts and their adaptations to live on land.
Journal ArticleDOI
The Moss Physcomitrium (Physcomitrella) patens: A Model Organism for Non-Seed Plants
TL;DR: A number of technological advances have recently opened the door to forward genetics as well as extremely efficient and precise genome editing in P. patens, and areas where this moss has had the most impact on plant biology are described.
Journal ArticleDOI
An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages.
Guru V. Radhakrishnan,Jean Keller,Mélanie K. Rich,Tatiana Vernié,Duchesse Lacour Mbadinga Mbadinga,Nicolas Vigneron,Ludovic Cottret,Hélène San Clemente,Cyril Libourel,Jitender Cheema,Anna-Malin Linde,D. Magnus Eklund,Shifeng Cheng,Gane Ka-Shu Wong,Ulf Lagercrantz,Fay-Wei Li,Fay-Wei Li,Giles E. D. Oldroyd,Giles E. D. Oldroyd,Pierre-Marc Delaux +19 more
TL;DR: An extensive phylogenomics study based on hundreds of genomes and transcriptomes provides a new interpretation of the evolution of different types of symbiotic associations in land plants, and reveals a conserved ancestral symbiosis pathway.
Journal ArticleDOI
Plant evolution driven by interactions with symbiotic and pathogenic microbes
TL;DR: How insights from a range of plant and algal genomes reveal sustained use through evolution of ancient gene modules as well as emergence of lineage-specific specializations is reviewed.
Journal ArticleDOI
Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae
Per K.I. Wilhelmsson,Cornelia Mühlich,Kristian K. Ullrich,Stefan A. Rensing,Stefan A. Rensing +4 more
TL;DR: It is found that many TAP families previously thought to be specific for land plants actually evolved in streptophyte (charophyte) algae, and thus probably evolved concomitant with the water-to-land-transition.