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Kara Ronellenfitch
Researcher at Allen Institute for Brain Science
Publications - 6
Citations - 557
Kara Ronellenfitch is an academic researcher from Allen Institute for Brain Science. The author has contributed to research in topics: Visual perception & Interneuron. The author has an hindex of 4, co-authored 5 publications receiving 243 citations.
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Journal ArticleDOI
Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells.
Nathan W. Gouwens,Staci A. Sorensen,Fahimeh Baftizadeh,Agata Budzillo,Brian Lee,Tim Jarsky,Lauren Alfiler,Katherine Baker,Eliza Barkan,Kyla Berry,Darren Bertagnolli,Kris Bickley,Jasmine Bomben,Thomas Braun,Krissy Brouner,Tamara Casper,Kirsten Crichton,Tanya L. Daigle,Rachel A. Dalley,Rebecca de Frates,Nick Dee,Tsega Desta,Samuel Dingman Lee,Nadezhda Dotson,Tom Egdorf,Lauren Ellingwood,Rachel Enstrom,Luke Esposito,Colin Farrell,David Feng,Olivia Fong,Rohan Gala,Clare Gamlin,Amanda Gary,Alexandra Glandon,Jeff Goldy,Melissa Gorham,Lucas T. Graybuck,Hong Gu,Kristen Hadley,Michael Hawrylycz,Alex M. Henry,DiJon Hill,Madie Hupp,Sara Kebede,Tae Kyung Kim,Lisa Kim,Matthew Kroll,Changkyu Lee,Katherine E. Link,Matthew Mallory,Rusty Mann,Michelle Maxwell,Medea McGraw,Delissa McMillen,Alice Mukora,Lindsay Ng,Lydia Ng,Kiet Ngo,Philip R. Nicovich,Aaron Oldre,Daniel Park,Hanchuan Peng,Osnat Penn,Thanh Pham,Alice Pom,Zoran Popović,Lydia Potekhina,Ramkumar Rajanbabu,Shea Ransford,David Reid,Christine Rimorin,Miranda Robertson,Kara Ronellenfitch,Augustin Ruiz,David Sandman,Kimberly A. Smith,Josef Sulc,Susan M. Sunkin,Aaron Szafer,Michael Tieu,Amy Torkelson,Jessica Trinh,Herman Tung,Wayne Wakeman,Katelyn Ward,Grace Williams,Zhi Zhou,Jonathan T. Ting,Anton Arkhipov,Uygar Sümbül,Ed S. Lein,Christof Koch,Zizhen Yao,Bosiljka Tasic,Jim Berg,Gabe J. Murphy,Hongkui Zeng +97 more
TL;DR: 28 met- types are defined that have congruent morphological, electrophysiological, and transcriptomic properties and robust mutual predictability, and layer-specific axon innervation pattern is identified as a defining feature distinguishing different met-types.
Journal ArticleDOI
Survey of spiking in the mouse visual system reveals functional hierarchy
Joshua H. Siegle,Xiaoxuan Jia,Séverine Durand,Sam Gale,Corbett Bennett,Nile Graddis,Greggory Heller,Tamina K. Ramirez,Hannah Choi,Hannah Choi,Jennifer Luviano,Peter A. Groblewski,Ruweida Ahmed,Anton Arkhipov,Amy Bernard,Yazan N. Billeh,Dillan Brown,Michael A. Buice,Nicolas Cain,Shiella Caldejon,Linzy Casal,Andrew Cho,Maggie Chvilicek,Timothy C. Cox,Kael Dai,Daniel J. Denman,Daniel J. Denman,Saskia E. J. de Vries,Roald Dietzman,Luke Esposito,Colin Farrell,David Feng,John Galbraith,Marina Garrett,Emily Gelfand,Nicole Hancock,Julie A. Harris,Robert Howard,Brian Hu,Ross Hytnen,Ramakrishnan Iyer,Erika Jessett,Katelyn Johnson,India Kato,Justin T. Kiggins,Sophie Lambert,Jérôme Lecoq,Peter Ledochowitsch,Jung Hoon Lee,Arielle Leon,Yang Li,Elizabeth Liang,Fuhui Long,Kyla Mace,Jose Melchior,Daniel Millman,Tyler Mollenkopf,Chelsea Nayan,Lydia Ng,Kiet Ngo,Thuyahn Nguyen,Philip R. Nicovich,Kat North,Gabriel Koch Ocker,Douglas R. Ollerenshaw,Michael Oliver,Marius Pachitariu,Jed Perkins,Melissa Reding,David Reid,Miranda Robertson,Kara Ronellenfitch,Sam Seid,Cliff Slaughterbeck,Michelle Stoecklin,David Sullivan,Ben Sutton,Jackie Swapp,Carol L. Thompson,Kristen Turner,Wayne Wakeman,Jennifer D. Whitesell,Derric Williams,Ali Williford,R.D. Young,Hongkui Zeng,Sarah A. Naylor,John W. Phillips,R. Clay Reid,Stefan Mihalas,Shawn R. Olsen,Christof Koch +91 more
TL;DR: In this paper, a large-scale dataset of tens of thousands of units in six cortical and two thalamic regions in the brains of mice responding to a battery of visual stimuli is presented.
Posted ContentDOI
A survey of spiking activity reveals a functional hierarchy of mouse corticothalamic visual areas
Joshua H. Siegle,Xiaoxuan Jia,Séverine Durand,Samuel D. Gale,Corbett Bennett,Nile Graddis,Greggory Heller,Tamina K. Ramirez,Hannah Choi,Hannah Choi,Jennifer Luviano,Peter A. Groblewski,Ruweida Ahmed,Anton Arkhipov,Amy Bernard,Yazan N. Billeh,Brown D,Michael A. Buice,Nicholas Cain,Shiella Caldejon,Linzy Casal,Cho A,Chvilicek M,Timothy C. Cox,Kael Dai,Daniel J. Denman,Daniel J. Denman,de Vries Sej,Dietzman R,Luke Esposito,Colin Farrell,David Feng,John Galbraith,Marina Garrett,Emily Gelfand,Nicole Hancock,Julie A. Harris,Robert Howard,Brian Hu,Hytnen R,Ramakrishnan Iyer,Jessett E,Johnson K,India Kato,Justin T. Kiggins,Sophie Lambert,Jérôme Lecoq,Peter Ledochowitsch,Jung Hoon Lee,Arielle Leon,Yang Li,Liang E,Fuhui Long,Kyla Mace,Melchior J,Daniel Millman,Mollenkopf Ts,Chelsea Nayan,Lindsay Ng,Kiet Ngo,Thuyanh V. Nguyen,Philip R. Nicovich,Kat North,Gabriel Koch Ocker,Douglas R. Ollerenshaw,Michael Oliver,Marius Pachitariu,Jed Perkins,Melissa Reding,David Reid,Miranda Robertson,Kara Ronellenfitch,Sam Seid,Clifford R. Slaughterbeck,Michelle Stoecklin,David Sullivan,Sutton B,Jackie Swapp,Carol L. Thompson,Karly M. Turner,Wayne Wakeman,Jennifer D. Whitesell,Derric Williams,Ali Williford,R.D. Young,Hongkui Zeng,Sarah A. Naylor,John W. Phillips,Robert Reid,Stefan Mihalas,Olsen,Christof Koch +91 more
TL;DR: A large, open dataset that surveys spiking from units in six cortical and two thalamic regions responding to a battery of visual stimuli finds that inter-area functional connectivity mirrors the anatomical hierarchy from the Allen Mouse Brain Connectivity Atlas and provides a foundation for understanding coding and dynamics in the mouse cortico-thalamic visual system.
Posted ContentDOI
Toward an integrated classification of neuronal cell types: morphoelectric and transcriptomic characterization of individual GABAergic cortical neurons
Nathan W. Gouwens,Staci A. Sorensen,Fahimeh Baftizadeh,Agata Budzillo,Brian Lee,Tim Jarsky,Lauren Alfiler,Anton Arkhipov,Katherine Baker,Eliza Barkan,Kyla Berry,Darren Bertagnolli,Kris Bickley,Jasmine Bomben,Thomas Braun,Krissy Brouner,Tamara Casper,Kirsten Crichton,Tanya L. Daigle,Rachel A. Dalley,Rebecca de Frates,Nick Dee,Tsega Desta,Samuel Dingman Lee,Nadezhda Dotson,Tom Egdorf,Lauren Ellingwood,Rachel Enstrom,Luke Esposito,Colin Farrell,David Feng,Olivia Fong,Rohan Gala,Clare Gamlin,Amanda Gary,Alexandra Glandon,Jeff Goldy,Melissa Gorham,Lucas T. Graybuck,Hong Gu,Kristen Hadley,Michael Hawrylycz,Alex M. Henry,DiJon Hill,Madie Hupp,Sara Kebede,Tae Kyung Kim,Lisa Kim,Matthew Kroll,Changkyu Lee,Katherine E. Link,Matthew Mallory,Rusty Mann,Michelle Maxwell,Medea McGraw,Delissa McMillen,Alice Mukora,Lindsay Ng,Lydia Ng,Kiet Ngo,Philip R. Nicovich,Aaron Oldre,Daniel Park,Hanchuan Peng,Osnat Penn,Thanh Pham,Alice Pom,Lydia Potekhina,Ramkumar Rajanbabu,Shea Ransford,David Reid,Christine Rimorin,Miranda Robertson,Kara Ronellenfitch,Augustin Ruiz,David Sandman,Kimberly A. Smith,Josef Sulc,Susan M. Sunkin,Aaron Szafer,Michael Tieu,Amy Torkelson,Jessica Trinh,Herman Tung,Wayne Wakeman,Katelyn Ward,Grace Williams,Zhi Zhou,Jonathan T. Ting,Uygar Sümbül,Ed S. Lein,Christof Koch,Zizhen Yao,Bosiljka Tasic,Jim Berg,Gabe J. Murphy,Hongkui Zeng +96 more
TL;DR: This work characterized the transcriptomes and intrinsic physiological properties of over 3,700 GABAergic mouse visual cortical neurons and reconstructed the local morphologies of 350 of those neurons, finding that most transcriptomic types (t-types) occupy specific laminar positions within mouse visual cortex, and many of those t-types exhibit consistent electrophysiological and morphological features.
Journal ArticleDOI
Toward an Integrated Classification of Cell Types: Morphoelectric and Transcriptomic Characterization of Individual GABAergic Cortical Neurons
Nathan W. Gouwens,Staci A. Sorensen,Fahimeh Baftizadeh,Agata Budzillo,Brian Lee,Tim Jarsky,Lauren Alfiler,Katherine Baker,Eliza Barkan,Kyla Berry,Darren Bertagnolli,Kris Bickley,Jasmine Bomben,Thomas Braun,Kirssy Brouner,Tamara Casper,Kirsten Crichton,Tanya L. Daigle,Rachel A. Dalley,Rebeeca de Frates,Nick Dee,Tsega Desta,Samuel Dingman Lee,Nadezhda Dotson,Tom Egdorf,Lauren Ellingwood,Rachel Enstrom,Luke Esposito,Colin Farrell,David Feng,Olivia Fong,Rohan Gala,Clare Gamlin,Amanda Gary,Alexandra Glandon,Jeff Goldy,Melissa Gorham,Lucas T. Graybuck,Hong Gu,Kirsten Hadley,Michael Hawrylycz,Alex M. Henry,DiJon Hill,Madie Happ,Sara Kebede,Tae Kyung Kim,Lisa Kim,Matthew Kroll,Changkyu Lee,Katherine E. Link,Matthew Mallory,Rusty Mann,Michelle Maxwell,Medea McGraw,Delissa McMillen,Alice Mukora,Lindsay Ng,Lydia Ng,Kiet Ngo,Philip R. Nicovich,Aaron Oldre,Daniel Park,Hanchuan Peng,Osnat Penn,Thanh Pham,Alice Pom,Lyida Potekhina,Ramkumar Rajanbabu,Shea Ransford,David Reid,Christine Rimorin,Miranda Robertson,Kara Ronellenfitch,Augustin Ruiz,David Sandman,Kimberly A. Smith,Josef Sulc,Susan M. Sunkin,Aaron Szafer,Michael Tieu,Amy Torkelson,Jessica Trinh,Herman Tung,Wayne Wakeman,Katelyn Ward,Grace Williams,Zhi Zhou,Jonathan T. Ting,Anton Arkhipov,Uygar Sümbül,Ed S. Lein,Christof Koch,Zizhen Yao,Bosiljka Tasic,Jim Berg,Gabe J. Murphy,Hongkui Zeng +96 more
TL;DR: It is found that most transcriptomic types (t-types) occupy specific laminar positions within mouse visual cortex, and many of those t-types exhibit consistent electrophysiological and morphological features.