C
Colin Farrell
Researcher at Allen Institute for Brain Science
Publications - 25
Citations - 1511
Colin Farrell is an academic researcher from Allen Institute for Brain Science. The author has contributed to research in topics: Visual cortex & Neocortex. The author has an hindex of 11, co-authored 20 publications receiving 783 citations.
Papers
More filters
Journal ArticleDOI
Classification of electrophysiological and morphological neuron types in the mouse visual cortex.
Nathan W. Gouwens,Staci A. Sorensen,Jim Berg,Changkyu Lee,Tim Jarsky,Jonathan T. Ting,Susan M. Sunkin,David Feng,Costas A. Anastassiou,Eliza Barkan,Kris Bickley,Nicole Blesie,Thomas Braun,Krissy Brouner,Agata Budzillo,Shiella Caldejon,Tamara Casper,Dan Castelli,Peter Chong,Kirsten Crichton,Christine Cuhaciyan,Tanya L. Daigle,Rachel A. Dalley,Nick Dee,Tsega Desta,Songlin Ding,Samuel Dingman,Alyse Doperalski,Nadezhda Dotson,Tom Egdorf,Michael S. Fisher,Rebecca de Frates,Emma Garren,Marissa Garwood,Amanda Gary,Nathalie Gaudreault,Keith B. Godfrey,Melissa Gorham,Hong Gu,Caroline Habel,Kristen Hadley,James Harrington,Julie A. Harris,Alex M. Henry,DiJon Hill,Samuel R Josephsen,Sara Kebede,Lisa Kim,Matthew Kroll,Brian Lee,Tracy Lemon,Katherine E. Link,Xiaoxiao Liu,Brian Long,Rusty Mann,Medea McGraw,Stefan Mihalas,Alice Mukora,Gabe J. Murphy,Lindsay Ng,Kiet Ngo,Thuc Nghi Nguyen,Philip R. Nicovich,Aaron Oldre,Daniel Park,Sheana Parry,Jed Perkins,Lydia Potekhina,David Reid,Miranda Robertson,David Sandman,Martin Schroedter,Cliff Slaughterbeck,Gilberto J. Soler-Llavina,Josef Sulc,Aaron Szafer,Bosiljka Tasic,Naz Taskin,Corinne Teeter,Nivretta Thatra,Herman Tung,Wayne Wakeman,Grace Williams,Rob Young,Zhi Zhou,Colin Farrell,Hanchuan Peng,Michael Hawrylycz,Ed Lein,Lydia Ng,Anton Arkhipov,Amy Bernard,John W. Phillips,Hongkui Zeng,Christof Koch +94 more
TL;DR: A single-cell characterization pipeline is established using standardized patch-clamp recordings in brain slices and biocytin-based neuronal reconstructions to establish a morpho-electrical taxonomy of cell types for the mouse visual cortex via unsupervised clustering analysis of multiple quantitative features.
Journal ArticleDOI
A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex
Saskia E. J. de Vries,Jérôme Lecoq,Michael A. Buice,Peter A. Groblewski,Gabriel Koch Ocker,Michael Oliver,David Feng,Nicholas Cain,Peter Ledochowitsch,Daniel Millman,Kate Roll,Marina Garrett,Tom Keenan,Leonard Kuan,Stefan Mihalas,Shawn R. Olsen,Carol L. Thompson,Wayne Wakeman,Jack Waters,Derric Williams,Chris Barber,Nathan Berbesque,Brandon Blanchard,Nicholas Bowles,Shiella Caldejon,Linzy Casal,Andrew Cho,Sissy Cross,Chinh Dang,Tim A. Dolbeare,Melise Edwards,John Galbraith,Nathalie Gaudreault,Terri L. Gilbert,Fiona Griffin,Perry Hargrave,Robert Howard,Lawrence Huang,Sean Jewell,Nika H. Keller,Ulf Knoblich,Josh D Larkin,Rachael Larsen,Chris Lau,Eric Lee,Felix Lee,Arielle Leon,Lu Li,Fuhui Long,Jennifer Luviano,Kyla Mace,Thuyanh V. Nguyen,Jed Perkins,Miranda Robertson,Sam Seid,Eric Shea-Brown,Eric Shea-Brown,Jianghong Shi,Nathan Sjoquist,Cliff Slaughterbeck,David Sullivan,Ryan Valenza,White C,Ali Williford,Daniela Witten,Jun Zhuang,Hongkui Zeng,Colin Farrell,Lydia Ng,Amy Bernard,John W. Phillips,R. Clay Reid,Christof Koch +72 more
TL;DR: An open, large-scale physiological survey of activity in the awake mouse visual cortex: the Allen Brain Observatory Visual Coding dataset is reported, revealing response specializations within the mouseVisual cortex.
Journal ArticleDOI
Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells.
Nathan W. Gouwens,Staci A. Sorensen,Fahimeh Baftizadeh,Agata Budzillo,Brian Lee,Tim Jarsky,Lauren Alfiler,Katherine Baker,Eliza Barkan,Kyla Berry,Darren Bertagnolli,Kris Bickley,Jasmine Bomben,Thomas Braun,Krissy Brouner,Tamara Casper,Kirsten Crichton,Tanya L. Daigle,Rachel A. Dalley,Rebecca de Frates,Nick Dee,Tsega Desta,Samuel Dingman Lee,Nadezhda Dotson,Tom Egdorf,Lauren Ellingwood,Rachel Enstrom,Luke Esposito,Colin Farrell,David Feng,Olivia Fong,Rohan Gala,Clare Gamlin,Amanda Gary,Alexandra Glandon,Jeff Goldy,Melissa Gorham,Lucas T. Graybuck,Hong Gu,Kristen Hadley,Michael Hawrylycz,Alex M. Henry,DiJon Hill,Madie Hupp,Sara Kebede,Tae Kyung Kim,Lisa Kim,Matthew Kroll,Changkyu Lee,Katherine E. Link,Matthew Mallory,Rusty Mann,Michelle Maxwell,Medea McGraw,Delissa McMillen,Alice Mukora,Lindsay Ng,Lydia Ng,Kiet Ngo,Philip R. Nicovich,Aaron Oldre,Daniel Park,Hanchuan Peng,Osnat Penn,Thanh Pham,Alice Pom,Zoran Popović,Lydia Potekhina,Ramkumar Rajanbabu,Shea Ransford,David Reid,Christine Rimorin,Miranda Robertson,Kara Ronellenfitch,Augustin Ruiz,David Sandman,Kimberly A. Smith,Josef Sulc,Susan M. Sunkin,Aaron Szafer,Michael Tieu,Amy Torkelson,Jessica Trinh,Herman Tung,Wayne Wakeman,Katelyn Ward,Grace Williams,Zhi Zhou,Jonathan T. Ting,Anton Arkhipov,Uygar Sümbül,Ed S. Lein,Christof Koch,Zizhen Yao,Bosiljka Tasic,Jim Berg,Gabe J. Murphy,Hongkui Zeng +97 more
TL;DR: 28 met- types are defined that have congruent morphological, electrophysiological, and transcriptomic properties and robust mutual predictability, and layer-specific axon innervation pattern is identified as a defining feature distinguishing different met-types.
Journal ArticleDOI
Survey of spiking in the mouse visual system reveals functional hierarchy
Joshua H. Siegle,Xiaoxuan Jia,Séverine Durand,Sam Gale,Corbett Bennett,Nile Graddis,Greggory Heller,Tamina K. Ramirez,Hannah Choi,Hannah Choi,Jennifer Luviano,Peter A. Groblewski,Ruweida Ahmed,Anton Arkhipov,Amy Bernard,Yazan N. Billeh,Dillan Brown,Michael A. Buice,Nicolas Cain,Shiella Caldejon,Linzy Casal,Andrew Cho,Maggie Chvilicek,Timothy C. Cox,Kael Dai,Daniel J. Denman,Daniel J. Denman,Saskia E. J. de Vries,Roald Dietzman,Luke Esposito,Colin Farrell,David Feng,John Galbraith,Marina Garrett,Emily Gelfand,Nicole Hancock,Julie A. Harris,Robert Howard,Brian Hu,Ross Hytnen,Ramakrishnan Iyer,Erika Jessett,Katelyn Johnson,India Kato,Justin T. Kiggins,Sophie Lambert,Jérôme Lecoq,Peter Ledochowitsch,Jung Hoon Lee,Arielle Leon,Yang Li,Elizabeth Liang,Fuhui Long,Kyla Mace,Jose Melchior,Daniel Millman,Tyler Mollenkopf,Chelsea Nayan,Lydia Ng,Kiet Ngo,Thuyahn Nguyen,Philip R. Nicovich,Kat North,Gabriel Koch Ocker,Douglas R. Ollerenshaw,Michael Oliver,Marius Pachitariu,Jed Perkins,Melissa Reding,David Reid,Miranda Robertson,Kara Ronellenfitch,Sam Seid,Cliff Slaughterbeck,Michelle Stoecklin,David Sullivan,Ben Sutton,Jackie Swapp,Carol L. Thompson,Kristen Turner,Wayne Wakeman,Jennifer D. Whitesell,Derric Williams,Ali Williford,R.D. Young,Hongkui Zeng,Sarah A. Naylor,John W. Phillips,R. Clay Reid,Stefan Mihalas,Shawn R. Olsen,Christof Koch +91 more
TL;DR: In this paper, a large-scale dataset of tens of thousands of units in six cortical and two thalamic regions in the brains of mice responding to a battery of visual stimuli is presented.
Posted ContentDOI
A large-scale, standardized physiological survey reveals higher order coding throughout the mouse visual cortex
de Vries Sej,Jérôme Lecoq,Michael A. Buice,Peter A. Groblewski,Gabriel Koch Ocker,Michael Oliver,David Feng,Nicholas Cain,Peter Ledochowitsch,Daniel Millman,Kate Roll,Marina Garrett,Tom Keenan,Leonard Kuan,Stefan Mihalas,Shawn R. Olsen,Carol L. Thompson,Wayne Wakeman,Jack Waters,Derric Williams,Chris Barber,Nathan Berbesque,Brandon Blanchard,Bowles N,Shiella Caldejon,Linzy Casal,Cho A,Sissy Cross,Chinh Dang,Tim A. Dolbeare,Edwards M,John Galbraith,Nathalie Gaudreault,Fiona Griffin,Hargrave P,Robert Howard,Lawrence Huang,Sean Jewell,Nika H. Keller,Ulf Knoblich,Josh D Larkin,Rachael Larsen,Chris Lau,Eric Lee,Felix Lee,Arielle Leon,Lei Li,Fuhui Long,Jennifer Luviano,Kyla Mace,Thuyanh V. Nguyen,Jed Perkins,Miranda Robertson,Sam Seid,Eric Shea-Brown,Jingyi Shi,Nathan Sjoquist,Clifford R. Slaughterbeck,David Sullivan,Ryan Valenza,White C,Ali Williford,Daniela Witten,Jun Zhuang,Hongkui Zeng,Colin Farrell,Lindsay Ng,Amy Bernard,John W. Phillips,Robert Reid,Christof Koch +70 more
TL;DR: An open, large-scale physiological survey of neural activity in the awake mouse visual cortex: the Allen Brain Observatory Visual Coding dataset is reported, revealing functional differences across these dimensions and showing that visual cortical responses are sparse but correlated.