P
Pablo D. Rabinowicz
Researcher at University of Maryland, Baltimore
Publications - 27
Citations - 3014
Pablo D. Rabinowicz is an academic researcher from University of Maryland, Baltimore. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 20, co-authored 27 publications receiving 2700 citations. Previous affiliations of Pablo D. Rabinowicz include University of Maryland, College Park & Research Medical Center.
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Journal ArticleDOI
Draft genome sequence of the oilseed species Ricinus communis
Agnes P. Chan,Jonathan Crabtree,Qi Zhao,Hernan Lorenzi,Joshua Orvis,Daniela Puiu,Admasu Melake-Berhan,Kristine M Jones,Julia C. Redman,Grace Q. Chen,Edgar B. Cahoon,Melaku Gedil,Mario Stanke,Brian J. Haas,Jennifer R. Wortman,Claire M. Fraser-Liggett,Jacques Ravel,Pablo D. Rabinowicz,Pablo D. Rabinowicz +18 more
TL;DR: Comparative genomics analysis suggests the presence of an ancient hexaploidization event that is conserved across the dicotyledonous lineage and the number of members of the ricin gene family is larger than previously thought.
Journal ArticleDOI
Toward Sequencing Cotton ( Gossypium ) Genomes
Z. Jeffrey Chen,Brian E. Scheffler,Elizabeth S. Dennis,Barbara A. Triplett,Tianzhen Zhang,Wangzhen Guo,Xiao-Ya Chen,David M. Stelly,Pablo D. Rabinowicz,Christopher D. Town,Tony Arioli,Curt L. Brubaker,Roy G. Cantrell,Jean Marc Lacape,Mauricio Ulloa,Peng W. Chee,Alan R. Gingle,Candace H. Haigler,Richard G. Percy,Sukumar Saha,Thea A. Wilkins,Robert J. Wright,Allen Van Deynze,Yu-Xian Zhu,Shuxun Yu,Ibrokhim Y. Abdurakhmonov,Ishwarappa S. Katageri,P. Ananda Kumar,Mehboob-ur-Rahman,Yusuf Zafar,John Z. Yu,Russell J. Kohel,Jonathan F. Wendel,Andrew H. Paterson +33 more
TL;DR: Despite rapidly decreasing costs and innovative technologies, sequencing of angiosperm genomes is not yet undertaken lightly and the difficulties of sequencing and assembling complex genomes de novo are not yet addressed.
Journal ArticleDOI
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
Steven L. Salzberg,Daniel D. Sommer,Michael C. Schatz,Adam M. Phillippy,Pablo D. Rabinowicz,Seiji Tsuge,Ayako Furutani,Hirokazu Ochiai,Arthur L. Delcher,David R. Kelley,Ramana Madupu,Daniela Puiu,Diana Radune,Martin Shumway,Cole Trapnell,Gudlur Aparna,Gopaljee Jha,Alok Pandey,Prabhu B. Patil,Hiromichi Ishihara,Damien F. Meyer,Boris Szurek,Valérie Verdier,Ralf Koebnik,J. Maxwell Dow,Robert P. Ryan,Hisae Hirata,Shinji Tsuyumu,Sang Won Lee,Pamela C. Ronald,Ramesh V. Sonti,Marie-Anne Van Sluys,Jan E. Leach,Frank F. White,Adam J. Bogdanove +34 more
TL;DR: The complete genome sequence of strain PXO99A is reported on and its comparison to two previously sequenced strains, KACC10331 and MAFF311018, which are highly similar to one another and point to sources of genomic variation and candidates for strain-specific adaptations of this pathogen.
Journal ArticleDOI
The Cassava Genome: Current Progress, Future Directions
Simon Prochnik,Pradeep Reddy Marri,Brian Desany,Pablo D. Rabinowicz,Chinnappa D. Kodira,Mohammed Mohiuddin,Fausto J. Rodriguez,Fausto J. Rodriguez,Claude M. Fauquet,Joe Tohme,Timothy T. Harkins,Daniel S. Rokhsar,Daniel S. Rokhsar,Steve Rounsley,Steve Rounsley +14 more
TL;DR: A 454-based whole genome shotgun sequence has been assembled, which covers 69% of the predicted genome size and 96% of protein-coding gene space, and an efficient genotyping-by-sequencing (GBS) approach is being developed to catalog SNPs both within the mapping population and among diverse African farmer-preferred varieties of cassava.
Journal ArticleDOI
Cassava Genome From a Wild Ancestor to Cultivated Varieties
Wenquan Wang,Binxiao Feng,Jingfa Xiao,Zhiqiang Xia,Xincheng Zhou,Pinghua Li,Weixiong Zhang,Ying Wang,Birger Lindberg Møller,Peng Zhang,Ming-Cheng Luo,Gong Xiao,Jingxing Liu,Jun Yang,Songbi Chen,Pablo D. Rabinowicz,Xin Chen,Hong-Bin Zhang,Henan Ceballos,Qunfeng Lou,Meiling Zou,Luiz Joaquim Castelo Branco Carvalho,Changying Zeng,Jing Xia,Shixiang Sun,Fu Yuhua,Haiyan Wang,Cheng Lu,Mengbin Ruan,Shuigeng Zhou,Zhicheng Wu,Hui Liu,Rubini Kannangara,Kirsten Jørgensen,Rebecca Louise Neale,Maya Bonde,Nanna Heinz,Wenli Zhu,Shujuan Wang,Yang Zhang,Kun Pan,Mingfu Wen,Ping-An Ma,Zhengxu Li,Meizhen Hu,Wenbin Liao,Wenbin Hu,Shengkui Zhang,Jinli Pei,Anping Guo,Jianchun Guo,Jiaming Zhang,Zhengwen Zhang,Jianqiu Ye,Wenjun Ou,Yaqin Ma,Xinyue Liu,Luke J. Tallon,Kevin Galens,Sandra Ott,Jie Huang,Jingjing Xue,Feifei An,Qingqun Yao,Xiaojing Lu,Martin A. Fregene,L. Augusto Becerra Lopez-Lavalle,Jiajie Wu,Frank M. You,Meili Chen,Songnian Hu,Guojiang Wu,Silin Zhong,Peng Ling,Chen Yeyuan,Qinghuang Wang,Guodao Liu,Bin Liu,Kaimian Li,Ming Peng +79 more
TL;DR: The analyses reveal that genes involved in photosynthesis, starch accumulation and abiotic stresses have been positively selected, whereas those involved in cell wall biosynthesis and secondary metabolism have been negatively selected in the cultivated varieties, reflecting the result of natural selection and domestication.