R
Rodolfo A. Salido
Researcher at University of California, San Diego
Publications - 26
Citations - 484
Rodolfo A. Salido is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 6, co-authored 14 publications receiving 121 citations.
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Journal ArticleDOI
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
Smruthi Karthikeyan,J. Levy,Peter De Hoff,Gregory Humphrey,Amanda Birmingham,Kristen Jepsen,Sawyer Farmer,Helena M. Tubb,Tomás Mulet Valles,Caitlin E Tribelhorn,Rebecca Tsai,Stefan Aigner,Shashank Sathe,Niema Moshiri,Benjamin Henson,Adam Mark,A. Hakim,N. A. Baer,T. Barber,Pedro Belda-Ferre,Marisol Chacon,W. Cheung,Evelyn S Cresini,Emily R Eisner,Alma L. Lastrella,Elijah S. Lawrence,Clarisse Marotz,Toan Tri Dung Ngo,T. Ostrander,A. Plascencia,Rodolfo A. Salido,Phoebe Seaver,E. W. Smoot,Daniel McDonald,Robert M Neuhard,Angela L. Scioscia,Alysson M Satterlund,Elizabeth H. Simmons,Dismas B. Abelman,David Brenner,Judith C Bruner,Andrew Buckley,Michael Lee Ellison,Jeffrey Gattas,Steven L. Gonias,Matt Hale,Faith Kirkham Hawkins,Lydia Ikeda,Hemlata Jhaveri,Ted L. Johnson,Vincent J Kellen,Brendan Kremer,Gary Matthews,Ronald W. McLawhon,P. Ouillet,Daniel Park,Allorah Pradenas,Sharon L. Reed,Lindsay Riggs,Alison Sanders,Bradley Sollenberger,Angela Song,Benjamin A. White,Terri Winbush,Christine M. Aceves,C. Anderson,Karthik Gangavarapu,Emory Hufbauer,E. Kurzban,Justin Lee,Nathaniel L. Matteson,Edyth Parker,Sarah Perkins,Karthik S Ramesh,Refugio Robles-Sikisaka,M. A. Schwab,Emily Spencer,Shirlee Wohl,Laura Nicholson,Ian Howard Mchardy,David Dimmock,Charlotte A. Hobbs,Omid Bakhtar,Aaron Harding,A. D. Mendoza,Alexandre Bolze,D.S. Becker,Elizabeth T. Cirulli,Magnus Isaksson,Kelly M. Schiabor Barrett,Nicole L. Washington,John D Malone,Ashleigh Murphy Schafer,Nikos Gurfield,Sarah S Stous,Rebecca Fielding-Miller,Richard S. Garfein,Tommi L. Gaines,Cheryl Anderson,Natasha K. Martin,Robert E. Schooley,B. Austin,Duncan MacCannell,Stephen F. Kingsmore,William E. Lee,Seema Ramesh Shah,Eric McDonald,Alexander T. Yu,Mark Zeller,Kathleen M. Fisch,Christopher Evan Longhurst,Patricia Maysent,David T. Pride,Pradeep Khosla,Louise C. Laurent,Gene W. Yeo,Kristian G. Andersen,Rob Knight +117 more
TL;DR: In this paper , a scalable solution for wastewater genomic surveillance that allows early detection of SARS-CoV-2 variants and identification of cryptic transmission was proposed, in the controlled environment of a large university campus and the broader context of the surrounding county.
Journal ArticleDOI
Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals.
Joonatan Palmu,Joonatan Palmu,Aaro Salosensaari,Aaro Salosensaari,Aki S. Havulinna,Susan Cheng,Michael Inouye,Michael Inouye,Mohit Jain,Rodolfo A. Salido,Karenina Sanders,Caitriona Brennan,Gregory Humphrey,Jon G. Sanders,Erkki Vartiainen,Tiina Laatikainen,Tiina Laatikainen,Pekka Jousilahti,Veikko Salomaa,Rob Knight,Leo Lahti,Teemu J. Niiranen,Teemu J. Niiranen +22 more
TL;DR: The associations between overall gut taxonomic composition and BP are weak, individuals with hypertension demonstrate changes in several genera, highlighting the need for experimental studies.
Journal ArticleDOI
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.
Jon G. Sanders,Sergey Nurk,Rodolfo A. Salido,Jeremiah J. Minich,Zhenjiang Zech Xu,Qiyun Zhu,Cameron Martino,Marcus W. Fedarko,Timothy D. Arthur,Feng Chen,Brigid S. Boland,Greg Humphrey,Caitriona Brennan,Karenina Sanders,James Gaffney,Kristen Jepsen,Mahdieh Khosroheidari,Cliff Green,Marlon Liyanage,Jason Dang,Vanessa V. Phelan,Robert A. Quinn,Robert A. Quinn,Anton Bankevich,John T. Chang,Tariq M. Rana,Douglas Conrad,William J. Sandborn,Larry Smarr,Pieter C. Dorrestein,Pieter C. Dorrestein,Pavel A. Pevzner,Rob Knight +32 more
TL;DR: A benchmark of library prep and sequencing using internal references generated by synthetic long-read technology is introduced, allowing us to evaluate high-throughput library preparation methods against gold-standard reference genomes derived from the samples themselves.
Journal ArticleDOI
Taxonomic signatures of cause-specific mortality risk in human gut microbiome
Aaro Salosensaari,Aaro Salosensaari,Ville Laitinen,Aki S. Havulinna,Guillaume Méric,Guillaume Méric,Susan Cheng,Susan Cheng,Markus Perola,Liisa Valsta,Georg Alfthan,Michael Inouye,Michael Inouye,Jeramie D. Watrous,Tao Long,Rodolfo A. Salido,Karenina Sanders,Caitriona Brennan,Gregory Humphrey,Jon G. Sanders,Mohit Jain,Pekka Jousilahti,Veikko Salomaa,Rob Knight,Leo Lahti,Teemu J. Niiranen +25 more
TL;DR: In this paper, the authors investigated the long-term association between gut microbiome variation and mortality in a well-phenotyped and representative population cohort from Finland and reported robust taxonomic and functional microbiome signatures related to the Enterobacteriaceae family that are associated with mortality risk during a 15-year follow-up.
Journal ArticleDOI
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment.
Clarisse Marotz,Pedro Belda-Ferre,Farhana Ali,Promi Das,Shi Huang,Kalen Cantrell,Lingjing Jiang,Cameron Martino,Rachel E. Diner,Gibraan Rahman,Daniel McDonald,George Armstrong,Sho Kodera,Sonya Donato,Gertrude Ecklu-Mensah,Neil Gottel,Mariana C. Salas Garcia,Leslie Y. Chiang,Rodolfo A. Salido,Justin P. Shaffer,Mac Kenzie Bryant,Karenina Sanders,Greg Humphrey,Gail Ackermann,Niina Haiminen,Kristen L. Beck,Ho-Cheol Kim,Anna Paola Carrieri,Laxmi Parida,Yoshiki Vázquez-Baeza,Francesca J. Torriani,Rob Knight,Jack A. Gilbert,Daniel A. Sweeney,Sarah M. Allard +34 more
TL;DR: In this paper, the authors used 16S rRNA gene amplicon sequencing to detect SARS-CoV-2 RNA detection with a random forest model in a hospital setting.