F
Fan Yang
Researcher at Shandong University
Publications - 59
Citations - 2484
Fan Yang is an academic researcher from Shandong University. The author has contributed to research in topics: Medicine & Chemistry. The author has an hindex of 17, co-authored 43 publications receiving 1682 citations. Previous affiliations of Fan Yang include University of Toronto & Purdue University.
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Journal ArticleDOI
Widespread Macromolecular Interaction Perturbations in Human Genetic Disorders
Nidhi Sahni,Song Yi,Mikko Taipale,Juan I. Fuxman Bass,Jasmin Coulombe-Huntington,Fan Yang,Fan Yang,Jian Peng,Jochen Weile,Jochen Weile,Georgios I. Karras,Yang Wang,István Kovács,István Kovács,Atanas Kamburov,Irina Krykbaeva,Mandy H. Y. Lam,George Tucker,Vikram Khurana,Amitabh Sharma,Amitabh Sharma,Yang-Yu Liu,Yang-Yu Liu,Nozomu Yachie,Nozomu Yachie,Quan Zhong,Yun Shen,Alexandre Palagi,Adriana San-Miguel,Changyu Fan,Dawit Balcha,Amélie Dricot,Daniel M. Jordan,Jennifer M. Walsh,Akash A. Shah,Xinping Yang,Ani K. Stoyanova,Alex Leighton,Michael A. Calderwood,Yves Jacob,Yves Jacob,Michael E. Cusick,Kourosh Salehi-Ashtiani,Luke Whitesell,Shamil R. Sunyaev,Shamil R. Sunyaev,Bonnie Berger,Albert-László Barabási,Albert-László Barabási,Benoit Charloteaux,David E. Hill,Tong Hao,Frederick P. Roth,Frederick P. Roth,Frederick P. Roth,Yu Xia,Yu Xia,Albertha J.M. Walhout,Albertha J.M. Walhout,Susan Lindquist,Susan Lindquist,Marc Vidal +61 more
TL;DR: This work functionally profile several thousand missense mutations across a spectrum of Mendelian disorders using various interaction assays, suggesting that disease-associated alleles that perturb distinct protein activities rather than grossly affecting folding and stability are relatively widespread.
Journal ArticleDOI
Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing
Xinping Yang,Xinping Yang,Jasmin Coulombe-Huntington,Shuli Kang,Gloria M. Sheynkman,Tong Hao,Aaron Richardson,Song Sun,Song Sun,Fan Yang,Yun A. Shen,Ryan R. Murray,Ryan R. Murray,Kerstin Spirohn,Bridget E. Begg,Bridget E. Begg,Miquel Duran-Frigola,Andrew MacWilliams,Samuel J. Pevzner,Samuel J. Pevzner,Quan Zhong,Quan Zhong,Shelly A. Trigg,Stanley Tam,Lila Ghamsari,Nidhi Sahni,Song Yi,Maria D. Rodriguez,Maria D. Rodriguez,Dawit Balcha,Guihong Tan,Michael Costanzo,Brenda J. Andrews,Charles Boone,Xianghong Jasmine Zhou,Kourosh Salehi-Ashtiani,Kourosh Salehi-Ashtiani,Benoit Charloteaux,Benoit Charloteaux,Alyce A. Chen,Michael A. Calderwood,Patrick Aloy,Frederick P. Roth,Frederick P. Roth,Frederick P. Roth,David E. Hill,Lilia M. Iakoucheva,Yu Xia,Yu Xia,Marc Vidal +49 more
TL;DR: This work cloned full-length open reading frames of alternatively spliced transcripts for a large number of human genes and used protein-protein interaction profiling to functionally compare hundreds of protein isoform pairs, revealing a widespread expansion of protein interaction capabilities through alternative splicing and suggesting that many alternative "isoforms" are functionally divergent (i.e., "functional alloforms").
Journal ArticleDOI
NLRP3 deficiency ameliorates neurovascular damage in experimental ischemic stroke
Fan Yang,Ziying Wang,Xinbing Wei,Huirong Han,Xianfang Meng,Yan Zhang,Weichen Shi,Fengli Li,Tao Xin,Qi Pang,Fan Yi +10 more
TL;DR: It is found that NLRP3 deficiency ameliorated cerebral injury in mice after ischemic stroke by reducing infarcts and blood–brain barrier (BBB) damage and that NOX2 deficiency improved outcomes after ischemia stroke by mediatingNLRP3 signaling.
Journal ArticleDOI
Human B cell clonal expansion and convergent antibody responses to SARS-CoV-2
Sandra C. A. Nielsen,Fan Yang,Katherine J. L. Jackson,Ramona A. Hoh,Katharina Röltgen,Grace H. Jean,Bryan A. Stevens,Ji-Yeun Lee,Arjun Rustagi,Angela J. Rogers,Abigail E. Powell,Molly Hunter,Javaria Najeeb,Ana R. Otrelo-Cardoso,Kathryn E. Yost,Bence Daniel,Kari C. Nadeau,Howard Y. Chang,Howard Y. Chang,Ansuman T. Satpathy,Theodore S. Jardetzky,Peter S. Kim,Taia T. Wang,Benjamin A. Pinsky,Catherine A. Blish,Scott D. Boyd +25 more
TL;DR: It is shown that patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) who develop coronav virus disease 2019 (COVID-19) display early recruitment of B cells expressing a limited subset of IGHV genes, progressing to a highly polyclonal response of B Cells with broader I GHV gene usage and extensive class switching to IgG and IgA subclasses with limited somatic hypermutation in the initial weeks of infection.
Journal ArticleDOI
A framework for exhaustively mapping functional missense variants
Jochen Weile,Song Sun,Atina G. Cote,Atina G. Cote,Jennifer J. Knapp,Jennifer J. Knapp,Marta Verby,Marta Verby,Joseph C. Mellor,Yingzhou Wu,Carles Pons,Chi-Huey Wong,Chi-Huey Wong,Natascha van Lieshout,Fan Yang,Murat Tasan,Guihong Tan,Shan Yang,Douglas M. Fowler,Robert L. Nussbaum,Jesse D. Bloom,Marc Vidal,David E. Hill,Patrick Aloy,Frederick P. Roth +24 more
TL;DR: A deep mutational scanning framework is developed that produces exhaustive maps for human missense variants by combining random codon mutagenesis and multiplexed functional variation assays with computational imputation and refinement.