SRI International

About: SRI International is a nonprofit organization based out in Menlo Park, California, United States. It is known for research contribution in the topics: Ionosphere & Laser. The organization has 7222 authors who have published 13102 publications receiving 660724 citations. The organization is also known as: Stanford Research Institute & SRI.

Novel genes identified in a high-density genome wide association study for nicotine dependence

Abstract: Tobacco use is a leading contributor to disability and death worldwide, and genetic factors contribute in part to the development of nicotine dependence. To identify novel genes for which natural variation contributes to the development of nicotine dependence, we performed a comprehensive genome wide association study using nicotine dependent smokers as cases and non-dependent smokers as controls. To allow the efficient, rapid, and cost effective screen of the genome, the study was carried out using a two-stage design. In the first stage, genotyping of over 2.4 million single nucleotide polymorphisms (SNPs) was completed in case and control pools. In the second stage, we selected SNPs for individual genotyping based on the most significant allele frequency differences between cases and controls from the pooled results. Individual genotyping was performed in 1050 cases and 879 controls using 31 960 selected SNPs. The primary analysis, a logistic regression model with covariates of age, gender, genotype and gender by genotype interaction, identified 35 SNPs with P-values less than 10(-4) (minimum P-value 1.53 x 10(-6)). Although none of the individual findings is statistically significant after correcting for multiple tests, additional statistical analyses support the existence of true findings in this group. Our study nominates several novel genes, such as Neurexin 1 (NRXN1), in the development of nicotine dependence while also identifying a known candidate gene, the beta3 nicotinic cholinergic receptor. This work anticipates the future directions of large-scale genome wide association studies with state-of-the-art methodological approaches and sharing of data with the scientific community.

Context-specific independence in Bayesian networks

Abstract: Bayesian networks provide a language for qualitatively representing the conditional independence properties of a distribution, This allows a natural and compact representation of the distribution, eases knowledge acquisition, and supports effective inference algorithms. It is well-known, however, that there are certain independencies that we cannot capture qualitatively within the Bayesian network structure: independencies that hold only in certain contexts, i.e., given a specific assignment of values to certain variables, In this paper, we propose a formal notion of context-specific independence (CSI), based on regularities in the conditional probability tables (CPTs) at a node. We present a technique, analogous to (and based on) d-separation, for determining when such independence holds in a given network. We then focus on a particular qualitative representation scheme--tree-structured CPTs-- for capturing CSI. We suggest ways in which this representation can be used to support effective inference algorithms, in particular, we present a structural decomposition of the resulting network which can improve the performance of clustering algorithms, and an alternative algorithm based on outset conditioning.

Age-related decline in brain white matter anisotropy measured with spatially corrected echo-planar diffusion tensor imaging.

Abstract: Echo planar (EP) diffusion tensor imaging (DTI) permits in vivo identification of the orientation and coherence of brain white matter tracts but suffers from field inhomogeneity-induced geometric distortion. To reduce spatial distortion, polynomial warping corrections were applied and the effects tested on measures of fractional anisotropy (FA) in the genu and splenium of corpus callosum. Implementation entailed spatially warping EP images obtained without diffusion weighting (b = 0) to long-echo T(2)-weighted fast spin echo images, collected for anatomical delineation, tissue segmentation, and coregistration with the diffusion images. Using the optimal warping procedure (third-order polynomial), the effects of age on FA and a quantitative measure of intervoxel coherence (C) in the genu, splenium, centrum semiovale, and frontal and parietal pericallosal white matter were examined in 31 healthy men (23-76 years). FA declined significantly with age in all regions except the splenium, whereas intervoxel coherence positively correlated with age in the genu. Magn Reson Med 44:259-268, 2000.

Single crystal metals encapsulated in carbon nanoparticles.

Abstract: Single-domain microcrystals of LaC2 encapsulated within nanoscale polyhedral carbon particles have been synthesized in a carbon arc. Typical particle sizes are on the order of 20 to 40 nanometers. The stoichiometry and phase of the La-containing crystals have been assigned from characteristic lattice spacings observed by high-resolution transmission electron microscopy and energy dispersive spectroscopy (EDS). EDS spectra show that La and C are the only elements present. Characteristic interatomic distances of 3.39 and 2.78 angstroms identify the compound inside the nanoparticle cavities as α-LaC2, the phase of LaC2 that is stable at room temperature. Bulk α-LaC2 is metallic and hydrolytic. Observation of crystals of pure encapsulated α-LaC2 that were exposed to air for several days before analysis indicates that the LaC2 is protected from degradation bythe carbon polyhedral shells of the nanoparticles. A high percentage of the carbon nanoparticles have encapsulated LaC2 single crystals. These carbon-coated metal crystals form a new class of materials that can be protected in their pure or carbide forms and may have interesting and useful properties.

On acting together

Abstract: Joint action by a team does not consist merely of simultaneous and coordinated individual actions; to act together, a team must be aware of and care about the status of the group effort as a whole. We present a formal definition of what it could mean for a group to jointly commit to a common goal, and explore how these joint commitments relate to the individual commitments of the team members. We then consider the case of joint intention, where the goal in question involves the team performing some action. In both cases, the theory is formulated in a logical language of belief, action, and time previously used to characterize individual commitment and intention. An important consequence of the theory is the types of communication among the team members that it predicts will often be necessary.