Vrije Universiteit Brussel

About: Vrije Universiteit Brussel is a education organization based out in Brussels, Belgium. It is known for research contribution in the topics: Population & Context (language use). The organization has 14295 authors who have published 38258 publications receiving 1203970 citations. The organization is also known as: VUB.

Crystal structure of the β2 adrenergic receptor-Gs protein complex.

Abstract: G protein-coupled receptors (GPCRs) are responsible for the majority of cellular responses to hormones and neurotransmitters as well as the senses of sight, olfaction and taste. The paradigm of GPCR signalling is the activation of a heterotrimeric GTP binding protein (G protein) by an agonist-occupied receptor. The b2 adrenergic receptor (b2AR) activation of Gs, the stimulatory G protein for adenylyl cyclase, has long been a model system for GPCR signalling. Here we present the crystal structure of the active state ternary complex composed of agonist-occupied monomericb2AR and nucleotide-free Gs heterotrimer. The principal interactions between the b2AR and Gs involve the amino- and carboxy-terminal a-helices of Gs, with conformational changes propagating to the nucleotide-binding pocket. The

Microbial interactions: from networks to models

Abstract: Metagenomics and 16S pyrosequencing have enabled the study of ecosystem structure and dynamics to great depth and accuracy. Co-occurrence and correlation patterns found in these data sets are increasingly used for the prediction of species interactions in environments ranging from the oceans to the human microbiome. In addition, parallelized co-culture assays and combinatorial labelling experiments allow high-throughput discovery of cooperative and competitive relationships between species. In this Review, we describe how these techniques are opening the way towards global ecosystem network prediction and the development of ecosystem-wide dynamic models.

System Identification: A Frequency Domain Approach

Abstract: Preface to the First Edition Preface to the Second Edition Acknowledgments List of Operators and Notational Conventions List of Symbols List of Abbreviations Chapter 1 An Introduction to Identification Chapter 2 Measurement of Frequency Response Functions Standard Solutions Chapter 3 Frequency Response Function Measurements in the Presence of Nonlinear Distortions Chapter 4 Detection, Quantification, and Qualification of Nonlinear Distortions in FRF Measurements Chapter 5 Design of Excitation Signals Chapter 6 Models of Linear Time-Invariant Systems Chapter 7 Measurement of Frequency Response Functions The Local Polynomial Approach Chapter 8 An Intuitive Introduction to Frequency Domain Identification Chapter 9 Estimation with Know Noise Model Chapter 10 Estimation with Unknown Noise Model Standard Solutions Chapter 11 Model Selection and Validation Chapter 12 Estimation with Unknown Noise Model The Local Polynomial Approach Chapter 13 Basic Choices in System Identification Chapter 14 Guidelines for the User Chapter 15 Some Linear Algebra Fundamentals Chapter 16 Some Probability and Stochastic Convergence Fundamentals Chapter 17 Properties of Least Squares Estimators with Deterministic Weighting Chapter 18 Properties of Least Squares Estimators with Stochastic Weighting Chapter 19 Identification of Semilinear Models Chapter 20 Identification of Invariants of (Over) Parameterized Models References Subject Index Author Index About the Authors

A framework for human microbiome research

Abstract: A variety of microbial communities and their genes (microbiome) exist throughout the human body, playing fundamental roles in human health and disease. The NIH funded Human Microbiome Project (HMP) Consortium has established a population-scale framework which catalyzed significant development of metagenomic protocols resulting in a broad range of quality-controlled resources and data including standardized methods for creating, processing and interpreting distinct types of high-throughput metagenomic data available to the scientific community. Here we present resources from a population of 242 healthy adults sampled at 15 to 18 body sites up to three times, which to date, have generated 5,177 microbial taxonomic profiles from 16S rRNA genes and over 3.5 Tb of metagenomic sequence. In parallel, approximately 800 human-associated reference genomes have been sequenced. Collectively, these data represent the largest resource to date describing the abundance and variety of the human microbiome, while providing a platform for current and future studies.

The FoldX web server: an online force field

Abstract: FoldX is an empirical force field that was developed for the rapid evaluation of the effect of mutations on the stability, folding and dynamics of proteins and nucleic acids. The core functionality of FoldX, namely the calculation of the free energy of a macromolecule based on its high-resolution 3D structure, is now publicly available through a web server at http://foldx.embl.de/. The current release allows the calculation of the stability of a protein, calculation of the positions of the protons and the prediction of water bridges, prediction of metal binding sites and the analysis of the free energy of complex formation. Alanine scanning, the systematic truncation of side chains to alanine, is also included. In addition, some reporting functions have been added, and it is now possible to print both the atomic interaction networks that constitute the protein, print the structural and energetic details of the interactions per atom or per residue, as well as generate a general quality report of the pdb structure. This core functionality will be further extended as more FoldX applications are developed.